Gene detail

Detailed information of alvinactis_v1_g14249 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_7:4908626...4927915
NR annotation: KXJ17768.1, Glycogen phosphorylase [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g14249

ATGATTGCGTTAGAACGACAATTCAAGGTCAGTAGTTTTGGAGATTTTACGCAAAAATTGTTACCGAAATCCTACAGAGACGAGAAGCCATGGATGGTGTACGCCAAGAACTTTCACCCAGACGAATACAACTCCTTCGTGTCAAGCGGTGATGAACATTGTGTTGTCTTTGATCCAGACAACATCCGTGATAGTAGCACCAGTCTTTCTGCATTCTTGGAGCGCTACGAGAGAGAAGATTGGACACCACCAATACACAAACTAAGAAAGACTGCTTGGGTATGGACATCTGACGAAGACAATGACACCAACACTGCAGATAGAGAGAAGATCAACTGCTCTGAATACAAAGAGCCAGCGCACAATCTGAGCAAATCTTTACGATGCTCTAACAAAACTGGCTCCAAAGTCAGTTTCTCTGATGATATCAACGTTACGGTCGACGCCTACAAGCTAGAGGAGCCATCTACTAGTGGTCTTACACGTACCACAGCCTTGAAGTATGGACTGATTGCCATGGGCGTTGGCCTTGGTGCTTACgtgtataAAGCTGCACCAGGAAGTGAATGGAGTTTTGCCACAGGGAGCCCAAACCTCACTAACCAGGAAGTGGTCAGCGGAAGTTCGCATGAAAGCAAAATAGACAAGATGGCCGCCTTCTACAAGGATGCTTGTATTCCACATTACGATTGGCCGGCCACTGTCTTTTCAGTCGATTGCACAGGAAGTCATGCTGTTCTGGGCGCTCGTAAAGGTTTAGCCTTCATCAATTTGGACAATCCATCTGTAATTGCTAAGAAGGTTACACGGAACAGTAAATGGGAGTGTGGTACAACAGAATGGAATCCACATCTCTCACACAAGCATATACTTGTCTCTGTGTCAAATCAAAAAGCTGAGATTTGGAGATGGAGAGATGGTAGTGGTACTCAACAGCAGATTCTTAGAGCTCATACAAGAGCAATAAGTGATGTCAACTGGTCATGGTACGACCCTCAGCTATTATCTACCTGCTCTGTGGACCAGTTTGTGTACATTTGGGACTTAAGGGACGGTAAGAAACCAGCTACATCCTTACAAACAGTTGTTGGTGCCTCTCAAGTGAAGTGGAACAGAGAAGACAGACATGTGCTTGCTACCAGTCATGATGGAGATATTAGAGTATGGGATCTTAGAAAAGGCAACGCCCCTGTGGTGTACATTACAGCTCACCTGTCCAAGGTCCATGGTATTGACTGGTCATATAACAGTGGGACGGCACTAGCAACTTGCAGTAATGACTCCACTGTTAAGTTATGGAACACACAGAACCCCCAGCAGCCAGAAGCTAAGCTGAACGCAagttatccagtttggagggcaagatatacgCCTTTTGGATATGGGTTGGTGACGGTCGTTGTCCCACAGCTAAGACGTGGTGAGCACTCCTTGTGTCTGTGGAACACTGTGAACATGACCTCCACAGTACCACCCCCCGTGTATACTTTTGAGGGTCATGGTGACGTAGTGTTGGACTTTCATTGGCGATCCCAAATGGTTGAAGGAGAAGATCAATTCCAGCTCATTTCGTGGTCTAAGGACAACTGTCTGAGAATGTGGTCCCTTGAGCCACGAATTATTGCCGCTTGTAGTGACAATCCACAGGGTGACCATACAGAAATCAGTTCGTCTGCGGAAGCTTTGTCCAGCGGTAGTCCAAACGGCATCGGATCATTTGAGAAGTTGGGCGAGAGACGCCTGTCGCTGTCCATTCCACAAACATTGCAACAAGAATTTGCATTGATAAATGTTAACATTCCCAACGTTACCGTGGAACAGATGGATGCTGGCCAGCGGTGTTGCACAGTGTCCGTGACAAGTGGACCACACGTCACTCTATCCATTCACTTTCCCGCCATGTATCCAAATAACGCAATCCCATCATTTGAATTCACACCAGATACAGTACTATCGATGAATACGAAAACAAAACTCATCAAGACTCTACGTGAGACTGCACAAAGCCACGTGAAGTTGAATCAAACGTGTCTTGAACCGTGTTTAAGGCAGCTCGTCAGCCACGTAGAAGAACTCACGATCCAAGAAGAACAAATCATGGACATACGTGAACCGATCTCATATCGTCACGACCCAGTGTCGTACGGTAGTTACCAGGACGCAGCCATTCCTTTCCCCAGGACGTCAGGAGCAAGATTTGGAGCCAACGGTCTTCTAGTATGCTTCACTCGGCCAAGTGCGTCCAATGAACCAACACCAAGGTCACTTTCAGCACTCTCGGCGTATAACTGTCGTCCAGGAAGTGGTCCCGCATTACCACCTCTCATCAATTCCAGTAACAGTCTGACAGCCAATCAGAGACATTCACATACATTCAGTTCGTTTGGTCAGCTTGGCGGCTCGCAAAGAAAAGGAATCTTTAGAACACTTAGTCAGGATGCTCGAAAAACGTTAAATCTTAGAAGTCTGTCGACTCGAAGCACATCTACTTCCGGTTTAGTCGTCATTCGTGACGTCAGTATCTTGATCCCATTACACCAAAGCCTTGCTCAAAGTTACACACTCGAGGGCAATGACATTTTAGAGATATGTAAGAAGAACAAGTCAGCGGCGATGTCTGTAGGACGAAGGGACTTGGTTCAGACATGGTCCCTATTAGCACTGGTGCTCGACAAGACGTTAGCACAGTCTGCAGACACTGTTGAAGTAACACCCTGGGCAAGACATCCATTTGGAAGAAAGCTTATACGATCGCTGATCGATTATTACACCAAAATGCATGATATTCAAACGCTCGGTATGTTGGCTTGTGTGCTGTGCCATCACTCGATTCCAGAGTCCCTCAAGCCTCCTGGGATCATGTCGGCGTTTCATCCTCACGTCATCGGTAGCAAGTCGTTCACGAGTACAACGCTGTTTTGTTCTTCTCCGCCCGTCATCTTCGAAACGTGTACACCATCGATCAAGAGATCAAGATCAGCAGCAAGCAACACTATGGATCTCACTAGTCCCTCGGACCAGTCTCCCTGGAGCGAAGTTGTAATGCCTTTTGACAGCTGGACTCCGCCCGAGTTTATCATCAAGAAAGACTTGGCTGAAGAACAGCGACAAGCACACGAGAAGAATTCTAGATTAACGATGGCAAGTGAAGTTCGCCTGCACGATCACTTCAAAAGAGTCTACGCTGACGTTCTACATCGGTGGAACATGCTAGAAAAGCGGGTTGAGGTTTTGAAATTTCTCAGTTTGCAACAAGAACCACAGAAAAACATAGAGGTCAGCTCACGATGTCATTACTGTCGAAGGAAAATCAATGGCGCCGTGTGTAACTCGTGTAAGAAGTTTGGTCTCCAGTGTTCTATATGTAACGTGGCTGTTAGAGGTGCTAGTAACGTATGCATGGGGTGTGGCCATGGTGGACATACATTTCACATCATGCAGTGGTTCGAGAACATGACTGTCTGTCCGACAGGGTGTGGCTGCATGTGCATGAAGACAGGACCCATGACGTCAGAATAA

Transcript

alvinactis_v1_g14249

Protein

Uniprot

Uniprot term	Description
Q6PJI9	GATOR2 complex protein WDR59 OS=Homo sapiens OX=9606 GN=WDR59 PE=1 SV=2
Q5ZLG9	GATOR2 complex protein WDR59 OS=Gallus gallus OX=9031 GN=WDR59 PE=2 SV=1
Q8C0M0	GATOR2 complex protein WDR59 OS=Mus musculus OX=10090 GN=Wdr59 PE=1 SV=2

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF17120	zf-RING_16	RING/Ubox like zinc-binding domain	Domain	Interproscan
PF05773	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006575	Domain	RWD domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR039456	Domain	WDR59, modified RING finger, H2 subclass, C3H3C2-type	Interproscan
IPR049567	Family	GATOR complex protein WDR59-like	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR049566	Domain	WDR59/RTC1-like, RING zinc finger domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46170	GATOR COMPLEX PROTEIN WDR59	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005774	Cellular Component	vacuolar membrane	Interproscan
GO:0034198	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0035591	Molecular Function	signaling adaptor activity	Interproscan
GO:0035859	Cellular Component	Seh1-associated complex	Interproscan
GO:1904263	Biological Process	positive regulation of TORC1 signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20409	WDR59, SEA3; SEA/GATOR complex protein SEA3/WDR59	-	Membrane trafficking	ko04131	deepkoala