Detailed information of alvinactis_v1_g18814 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_9:21694557...21720953
NR annotation: XP_031549547.1, DNA damage-binding protein 1-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3U1J4DNA damage-binding protein 1 OS=Mus musculus OX=10090 GN=Ddb1 PE=1 SV=2
A1A4K3DNA damage-binding protein 1 OS=Bos taurus OX=9913 GN=DDB1 PE=1 SV=1
Q6P6Z0DNA damage-binding protein 1 OS=Xenopus laevis OX=8355 GN=ddb1 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DDB1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03178CPSF_ACPSF A subunit regionRepeatInterproscan
PF10433MMS1_NMono-functional DNA-alkylating methyl methanesulfonate N-termRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR050358FamilyRSE1/DDB1/CFT1/CPSF1Interproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR004871DomainCleavage/polyadenylation specificity factor, A subunit, C-terminalInterproscan
IPR018846DomainCleavage/polyadenylation specificity factor, A subunit, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0035861Cellular Componentsite of double-strand breakInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10610DDB1; DNA damage-binding protein 1-DNA repair and recombination proteinsko03400deepkoala

TOP