Gene detail

Detailed information of alvinactis_v1_g20641 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_10:21378850...21411045
NR annotation: XP_020911680.1, T-box transcription factor TBX20 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g20641

ATGTCACATCAAGAAAACCAGAGCCCTGGTGAAAGTGTAGGAGACGATCTCCATGAAGATCCAGTGCGTAATTCTCCCGAAGAAACAGATTTGCAGGCAAATACTAGGAGTAAACGTAAGGCTAAATCCACCAAACCAGCCAGCAGCAAGAAAGAGAGGAAGCGTACACAAAACATCAACGCTGCTTTTGCTGAATTGAGAAAACATATTCCTAACGTTCCATCGGACACTAAGTTATCTAAGATCAAAACACTGAAACTTGCCATGAGCTATATTCATCACTTGGAGTTCCAGCTAGAAGGGGAGGAGCATTATTGCGGATCTGAACGAGATCATTCACAAGTCGAAGAAGCACAAAGTGAACCTACTACTCCAACAGAACAACCACAAATACAGTCCATCAGAAATTCAGAGAGTTCTTATGACGAGGCTGAAGAAGGTCTCAGGTATTCTCGACGAAGTTCTCGTACTGGCTGGCCTCAACATGTTTGGGCTTTGGAGCTTGTTCATGGTAAAACGCCAACAGAGAGAAAGGCGTTACAACAAGTTGCATTTGTCAAGGTGTTTTTGAGTACAACAAGCTACCATTCATCAGCTGTTGGTCACGAAGAGTGTTCAAAAGCAAAAAAACAGCAAAAAGGGAATGAAGCTGAGTGTGGACAAGCCGATGACAAGGGACTCTCTGAGGAAGGCGCCCCATGCTCGAACAGCAAGAAGCGGAAATTACTGGACTTCGAATCCAACGATGAAAATGTAAAGCCCCAGGCAATTCTTGAAGGACGAGAGCTGTGGGAATGTTTCTACCGTCTAGGGACAGAGATGATAATAACTAAGAGCGGAAGACGTATGTTTCCCCCTTTGCGCGTGTCATTTACTGGTTTGGAACCCAGCCAATCATATGCCGTAGTACTGGATATTGTACCATTGGATAATAAGCGTCATCGATACTCCTATACAGACTCGGCGTGGTTTGTTGCTGGTGAAGCTGACCCCACCCCACCCCGCAGGGTGTATAGCCACCCCGAGTCTCCCTTTACCGGGGAAGAACTGGCTAGACAGGTGTTGTCGTTTGAGAGGGTAAAACTTACAAACAACCCAAAAGACTCCAACGGAAATATAATCCTCAACTCAATGCACAAGTATCAACCACGAGTCCACTTGATTCCAAACCCGTCAGATACAAACTCTGAGCGAGATCTGGAAAAGGCCGACACCTTTGTATTCCCAGAGACGGCATTTATGGCGGTGACCGCCTACCAAAATCACTTGATCACGCGATTAAAGATTTACAGTAACCCATTTGCAAAGGGATTTCGAGATACAACAAGACTTTTACCAAACTTTGAAGAATCCTCGACTCCTCCCATCACAAGATACAAGATGGACATGCACAGACGATTGCTGTCAAGGAAggcagatactgagatattgctaagtcatcgtattcgacgactagaagtgaaagaagcagttgaactgtgcagaagagaaattatgttgtatccaaggcaagccatccatcagtttctcttaaatacgctctcacatacaaacgctgccatacgccgattcgtgtgggcccactctaaaagatggcctttacatgaactcatcaaaagcaaatcaattgaactcaaagtcaaaatgaactctaatgttgacttaaatgtgaactcaactgagtactgcctagccaagcatgtataccacaacttgaagccagatgtactgattcagaagtgtgattccaacatggacaaatccaaagCTATGAAGACTGTGGCGCTTGTTGTTATGGTATGCCTGGCCTTGGCTTTAACAGTTCAAGCTCGGGACTATGAAGACTTGGATGGAATTGAACAGCGAGAAGCGGTAGTAGATAGAAGATCCAAGTATTCGCCTACACCAGAAGCAAGAATAGCCGCCAAGATCTGCAGACCATACTTTGCAGCCTGCAGACAGGACGCTACGAAAGCAGAAGTCCAAAAATGTTTTGTAAACTTCTTCAATGGATGCATGCTAAAGGTCAAAGCATCACTTCACGAGATGGCAAAGTGTGTTGAGACTTCAGGCAAAGATTTCTCTGAAGTCCAGGAATGCATTTCTGAACCAATCATGCAATGA

Transcript

alvinactis_v1_g20641

Protein

Uniprot

Uniprot term	Description
Q8UW76	T-box transcription factor TBX20 OS=Gallus gallus OX=9031 GN=TBX20 PE=2 SV=1
Q9ES03	T-box transcription factor TBX20 OS=Mus musculus OX=10090 GN=Tbx20 PE=2 SV=3
Q9UMR3	T-box transcription factor TBX20 OS=Homo sapiens OX=9606 GN=TBX20 PE=1 SV=4

Gene family

Gene family	Subfamily
Transcription Factors Family	bHLH
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907	T-box	T-box	Domain	Interproscan
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan