Gene detail

Detailed information of alvinactis_v1_g24145 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_13:520937...538211
NR annotation: XP_020896850.1, solute carrier family 22 member 15-like [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g24145

ATGAGCCGCTCTGAGAGAGAGAAAATGTTACCTTGGCTCATTCAGAAAGTTGATAGTGGTGACGTACCTGGGCTGCATTGGCTCGACAAGGAAAAGACGAAATTCCGTGTAACGTGGAAACATGCCGGAAAACCAGACTTTAACCTGGACCAGGATGCTGTACTGTTTCGCATGTGGGCTGAACACACAGGCAAATATAAACCCGGTGAACAACCTGACCCATCCACATGGAAGACGAGGTTTAGATGTGCGTTACGTAAACAACCCGACATTATGGAGATACCTGTAGCTAACAGCCTTGACGAGAGTGAACCATACAGGGTGTTTCGTCTAAAAAACAAAGTCAGCTCCTCAAAGACGCTACATGTTTCGACCACGCCCTCTCCTTCCCCTGATGACGTCATGGAAGTGTGTTCTTACCCTGCAACATTCCCGTACTCTAATAATGGAGCAACGACAGGCTACGAGTTTTCATTTCCTTCGCCTATGAGTAGTCTCACTTCCAGTCCTACCAACAGCATGGATAACAACCAGACGATGTGTTCAGACGATGACGACATAGACAACATTATCCCTACCCTACCCCCCTTGTTTAACCGTTATCACAACAGTATTCCTGAGAGTGACGTAAGCATGCCATGTTCTCCACCACTCTCACACGGCCAAATGGTACATGCGTTTACTGGTACCGACTACATAACTGGCCAACCATACAGTGAACCATTGTCAGCGGTCACACAAAGAAGTGATTACTATGAATACGTCAGTAGTCTCGTGACGACTACAGTGCATGATGGGATATCTCCTATGACGTCACAACAGACAGAAAATACTAACAACTTTGCAGAACAAAATGGCTTGGCTGCCCAGCTTGGATTTCTTATAGCGATGTTTGGTCCAGCGGTCATACAAGAAATGTTGaataaggaaatagacgaagatatgatagaaccatggcttcgagaaggaacacaaaacaccaattccgccattacaccgagtataggTACGATGTCGTCAAGTTCAGAAAAAGTCATTGAATCGGTGGGTGGTTTTGGTTGGTATCAATTGAGACTCTGTTTCATTGTTGGCTATGCTATTACTTTCTGTTCTGCTGTCTTGATGGTGATGACGTTCAGTACAGCGGAGCCTCCCTGGAGATGTACTGCAAACACCACTTCCTGTACCTTGAATGGAACCTTTAAAATAGGAGACAAGCACTATGACCACCGATGTAACATTCCACGTAGTGACTGGCAATTTGCTGTGGAAGGAGACTTTGATTCTATTGTTACAGAGTGGGATTTGGTCTGCGACACAGCCGTTTATGTAAGCATTGCAAACTCCATGACATTTGTGATGTGGATGCTTGGCGCCAGTTTCGCAAGTATTCTGAGTGATAAATTTGGCAGAAAGACAGTGACGTTTCCATTCACCATGTTCGCATGTCTGTGTGGATTCCTAACAGCCTTTGCTGGAAGATACTGGGTATTTGTGCTGTTCAGAGCTCTTGTAGGAATCGGTGTAGGTGGTTACTCTGTCTGTGCATTTACGCTTGTCATGGAGTATGTAGGCACACGGTATCGCAGTGCAGTTGGTTTTGGGATATTTTATTCATGGACGCTTGGCCTGTTCATCATATCGTTGCTAGGATACCTTATTCCCAATTGGCGCACGTTAACTATGATCATAAGTTCACCAGGACTGTTTTTCTTCCTTCTTTGGTGGTTTACTCCAGAGTCCTTAAGATGGCTGCTGGTGAAAGGAAAAGTTGACGAAGCCAAAAAGATACTGCGAAATGTTGTTCGGGTTAACAAGAAGAACATATCAGAAGAAGATATGACTTCACTTGAGAAGACAAGTGATGAAAATACCGGGCGACTTGGAGACGTGAGAGATCTTTTTGCCACTCGATCTCTGGCTCTAAGAACTTTGATTTCTTGGTATTGCTGGGCTGTAGGTAGCATGGTGTACTACGGCATATTTTTCAGCGCTCCAACAGTTGGTGGAAACATGTACTTAAACTTTTTCATCACGGCTGTATGTGAAGCGATTGCTATGTTTATAGGAATCATTTTACTAGACAAGTTTGGACGGAGGAAAACAATTATCGCGAATCTTTGGTTGGCGGGAGTTACCATGGTAATAGCTGCGCTTCTACATAATTATGATGACGGTCGTAAAGGCTACCTTGTAGGGCAGATCGTGGCAACGCTGGTTGTTGGTATGTTTTCTGTGACCATTGTGTTTGATGGAATGTATATATATTCTACAGAACTCTTTCCGACTGTTGTTAGAAACACTGCTGTAGGGACATCGAGTGCTGCAGCTCGCATTGGATCGGCCAGCGCTCCTTACATCGTATATTCGGCACGAGTCCATCCCCTCATGCCGTGCAGCATCATGGCAGTTGCTGCTGTCATTTGTGGAATACTGTGTTTTTTGCTCCCTGAGACATGTAATACAGCGATGCCTGACACCATTAAacaagtcaacaacaacaacaatgacaacgataacggcgacgatagcaacaTAAACGCATTGGCTGATGATGATAAAGTCAAGTTTTACACTACAAACATATAG

Transcript

alvinactis_v1_g24145

Protein

Uniprot

Uniprot term	Description
Q9LHQ6	Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana OX=3702 GN=OCT4 PE=2 SV=1
Q9VCA2	Organic cation transporter protein OS=Drosophila melanogaster OX=7227 GN=Orct PE=1 SV=1
O76082	Organic cation/carnitine transporter 2 OS=Homo sapiens OX=9606 GN=SLC22A5 PE=1 SV=1

Gene family

Gene family	Subfamily
Transcription Factors Family	IRF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00605	IRF	Interferon regulatory factor transcription factor	Domain	Interproscan
PF00083	Sugar_tr	Sugar (and other) transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001346	Domain	Interferon regulatory factor, DNA-binding domain	Interproscan
IPR005829	Conserved_site	Sugar transporter, conserved site	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR020846	Domain	Major facilitator superfamily domain	Interproscan
IPR005828	Family	Major facilitator, sugar transporter-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24064	SOLUTE CARRIER FAMILY 22 MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08202	SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5	-	Transporters	ko02000	deepkoala