Detailed information of alvinactis_v1_g24264 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_13:2057385...2072179
NR annotation: KXJ22034.1, putative uncharacterized protein, chloroplastic [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P0CE10ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1
F4KGU4ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1
Q38953Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana OX=3702 GN=At3g26560 PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|RBR

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21010HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF04408HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF07717OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF01485IBRIBR domain, a half RING-finger domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002867DomainIBR domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR044066DomainTRIAD supradomainInterproscan
IPR007502DomainHelicase-associated domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR048333DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR011709DomainDEAD-box helicase, OB foldInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR051945FamilyRRM MRD1 RNA Processing and Ribosome BiogenesisInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48039RNA-BINDING MOTIF PROTEIN 14BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12818DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22EC:5.6.2.6
Spliceosomeko03041deepkoala

TOP