Gene detail

Detailed information of alvinactis_v1_g29147 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_15:21215699...21230746
NR annotation: XP_031563189.1, coatomer subunit beta'-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g29147

ATGCCTCTTCGACTGGATATTAAGCGCAAGTTGTCTGCTCGTTCAGACCGTGTAAAGTCTGTAGATCTTCACCCTTCAGAGCCATGGATGTTAGCTAGCTTGTATAACGGCAATGTTCATATATGGAACTATGAATCACAGACACTTATTAAGACTTTTGAAGTGACTGACCTACCAGTGCGAGTGTCGAGGTTTGTACCTAGGAAAAATTGGGTCCTGACAGGCTCTGATGATATGATGTTACGAATCTTTAATTACAACACCCTTGAAAAGGTTCACGGGTTTGAAGCTCATTCAGATTATTTAAGATGCATTGCTGTTCATCCTACCCAGCCTTATGCTCTAACTAGTAGTGACGATATGCTGATAAAGCTGTGGGACTGGGACAAGAAATGGCAGTGTACCCAAGTATTTGAGGGCCACACCCATTACGTTATGCATATCGTAATCAATCCTAAAGATAATAATCAGTTTGCTAGTGCCTCATTGGACAGAACTATCAAGGTCTGGCAGCTTGGCTCTCCAACACCAAACTTTACTCTTGAGGGCCATGAAAAGGGTGTCAATACTGTGGATTATTTCCATGGTGGTGAGAAACCATATTTGATATCTGGTGCCGATGACAGACTGGTCAAGATTTGGGACTACCAGaacaagacctgtgtacagactctagaagggcatgcacagaatatctcctgtgttggcttccaTCCTGAGCTACCTATCATATTGACAGGATCTGAAGATGGCACTGTTAGGGTATGGCATGCCAATACTTATCGGCTTGAGAGCACCTTAAACTATGGTCTTGAGAGAGTTTGGTCAATGGCTATGAATAAGGGTTCTAATAATGTTGCCCTGGGATACGACGAAGGCAGTATGATTATCAAGCTTGGCCGTGAAGAGCCTGCAATGTCCATGGATTCTAATGGCAAAATTATATTTGCCAAGCACAGTGAGATTCAACAGGCGAATCTGAAAAATATGGCTGATGATGACATGAAAGATGGGGAAAGGCTAACTCTAGCTATCAAAGACATGGGTTCCTGTGAAATCTTCCCTCAGACATTGTGTCATAACCCTAATGGTAGATTTGTAGTTGTATGTGGTGATGGTGAATATATCATTTATACTGCTATGGCATTAAGAAACAAAAGCTTTGGATCTGCACAAGAGTTTGTATGGGCATCGGACTCCTCAGAATATGGAATCAGAGATGGCAGCAAGATTAAACTCTTTAAAAACTTTAAAGAAAAGAAATCTTTCAAGCCTGAGTATGGTGCAGATGGTATTTTTGGTGGATATTTGCTTGGTGTACGTTCAGCTGGTGGCCTGTCATTCTATGACTGGGACAGCACAGAAATGCTGAGAAGAATTGAAATTCATCCTAAAAACATATTTTGGGCAGACAGTGGAGAACTGTGTTGTATCAGTACAGATGATTCTTTCTTCATTCTCAAATACAGCGCAGACAATGTAGCTAGGGCTTTAGAAAACCGTGAAGAGATCACTGAGGATGGTATTGAGGATGCATTTGATGTCCAGGGAGAGATTGAGGAAATTGTTAAAACAGGAGTATGGGTTGGAGATTGCTTCATATATACTAACTCAGTCAACAGGCTGAACTACTACGTTGGTGGAGAAATTGTTACAATTGCTCATCTAGACAGGCCTATGTATCTGTTAGGGTATATCCCTAAGGATAGTCGTTTATATTTGGCTGACAAGGATATGAATGTGATCAGTTACTCACTGTTACTGTCTGTTCTGGAGTACCAGACCGCTGTGATGAGACAAGACTTTGAGACCGCTAAGCAGGTTCTACCAACAATTCCAAGAGATCAACGTAATCGTGTCGCTCATTTCCTTGAGAAACAAGGCTTTAAACAACAGGCCTTGGCTGTGTCATGTGACCCAGAACACAGGTTTGATTTGGCTATTAATCTTGCCGAGATGAAGATTGCATACGAGATTGCTGTTGAAGCAGAGAGCGAGGGTAAATGGAAACAGCTAGCAGAGTTAGCCATCTCAAAGTGTCAAATCCAGCTAGCCCAAGAGTGTCTTCACCACGCCCAAGATTTTGGTGGCTTGTTGCTGTTAGCAACATCCTCGGGCGATGCCGACATGATTGCTAGACTTGCAGTCACAGCAGCCAAGAAAGGAAAGAACAATGTAGCCTTCTTGGCGTATTTTGTACTTGGAAGAGTCGAAGAGTGTCTAGACTTGTTGTGCAATACCGATCGCTTCCCTGAAGCTGCATTCATGGCCAGGACATACGCACCTAGTCACGTATCCAGAATTGTGAAATTATGGAAGGAAGATTTAGAGAAGATCAACAAGAAAGCAGCCGATTCGTTGGCCGACCCGTCAGAGTATGACAATCTATTCCCTGAATTCCACAAAGCAGTAATGGCGGAACAGTTCTTGAAACATGAGAGATTGAACTTGAAACCTGCTTCACAGTATAAAGACGTACAGAGTAACAGTGAACGAGATGTCTTCGAAGAAATGAAAGTAGCCAAAGAGAACGGGACACTCGACTCGCTTATATCTGCAGCCGAGAACCTTACTATTGGTGGATTGGATGAATCACTGAATGAAACTGACACGCAGCCACCAATATTCAGTGCACCCACAGAACCTTTAGAACCCAGGTCCACTCAACCAGCACAGGCCGCGCCACCGCCGGAGCCTGAGTCCAAGCCTCCACCACCCGTGTCTAAATCTCCTGAAAGTGAAAACAAAATAGAATCATTAAAACTCAGTGATGATAAGCTCAAACTCCTGATGTGCGTTACGTTACAGGATGACGATGATGATCTCGATTTCGAGGACGCCGACAATAAGTTGGACGACGATGATTTTAATTTCGACGACGATGACTTACTAGATGATGACGATCTTCTTGACGATTAG

Transcript

alvinactis_v1_g29147

Protein

Uniprot

Uniprot term	Description
O35142	Coatomer subunit beta' OS=Rattus norvegicus OX=10116 GN=Copb2 PE=1 SV=3
P35606	Coatomer subunit beta' OS=Homo sapiens OX=9606 GN=COPB2 PE=1 SV=2
O55029	Coatomer subunit beta' OS=Mus musculus OX=10090 GN=Copb2 PE=1 SV=2

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04053	Coatomer_WDAD	Coatomer WD associated region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR011044	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR016453	Family	Coatomer beta' subunit (COPB2)	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR050844	Family	Coatomer complex subunit	Interproscan
IPR006692	Domain	Coatomer, WD associated region	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19876	COATOMER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0030126	Cellular Component	COPI vesicle coat	Interproscan
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17302	COPB2, SEC27; coatomer subunit beta'	-	Exosome	ko04147	deepkoala