Gene detail

Detailed information of alvinactis_v1_g29419 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g29419	PROTEIN CBG12474	chr_16	3276498	3299110	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g29419

ATGTCTGACAGGCGTATGTCGATTCTGATTGGATGCCTTTTATTCGTAGTTTCGCAAGTCAATGCCCAGCTTGTAACGTACCAAGTGACAATCAATTCAAACGATGATCTTAATCCCGATGACAAAGTTTTTGTTGCGTTTTACGGagagacacagcataaagagacacagcataaagaATTGGAAGGAATTCAAAATAAATTTATAGGAAAAAGTGAAGCATCCTTTACCGTATCAGCAAAAGATGTAGGTCCTTTAAAACAGTTGAAAATAAAAAGAGAGGTACATGGACCAAAACTGGATTGGCATGTCCACAAGATAACCGTGCACGACCAACACGGTACCACCTACGAATTCTTGTGTAAATGTGTATTGTCAAAGGAGAAAGGACTTGAAGTCACGAACACCCCACAAAATGTCATAAACCCGAGGAAAACAACAAGCTCCACTGGTTCGCCTAGTGCCGCTCCCTCTAATGCTCCAGGGGCGTCTGTGAATGGAGGAAATAAGAGTCCAACATCATCGCCCAGTGTCTCGCCATTCCCAAGCGAAATGCCCAACAAGGGTAAAGGTTCTTCGACCAATGCACCTTCTGCATCAGAGGGAACAGTATCTCCCAgccaaaagcctaaaggatctcaaggcccttctccttcgtctggagcaagcagtactagtgggaaaacgtcgcccggccaaaatcctaaaggttctcaaggccctacctcttcgcctggagcaagcagtactgctggaaaaacgtcgcccggccaaaatcctaaaggttctcaaggccctacctcttcgcctggagcaagcagtactgctggaaaaacgtcgcccggccaaaatcctaaaggttctcaaggccctacctcttcgcctggagcaagcagtactgctggaaaaacgtcgcccggccaaaatcctaaaggttctcaaggccctacctcttcgcctggagcaagcagtactagtgggaaaacgtcgcccggccaaaattctaaaggttccaatggcccttctccttcgtctggagcaagcagtactagtgggaaaacgtcgcccagccaaaaGCCACAAGTAAAACCTACATCTTCCAGTACCACTGGGGTTTTACCATCTCATGGATCAGCGTTACCCAACCAACATCCCAAAGGCTCCAAGGGTCCTACCCCTCCATCTGCAACAAGTGGCATCAGTGGTGGTACTAAATCGTCAGGTGCCACAATTAAAAACCCCAGTGAGGCTCCAAGTTCCACTCAGCCGACCAATGCATCTCCTGGATCACAGGGAACAAAATTACCCAGCAAAAAGCCAAAAGGCTCTGAGGGTCCTACAAGTGGTTCCAGTGGACCTACACCCTCTGGACAAAAGCCTGGAGGTTCTAAAAGCCCAACGAGTAGCACCAGTGGTGGATCGACTCCTCCGACCAATGCATCTCCAGGATCCGAAGGAACAGTGTCTCCAAGTCAAAAGCCTCAAGGTTCTAAGGGTCCTTCACCTTCTAGTTCGGCAAGTGCAACCAGTGGTGCTAGTTCAGCTTCCTCGCCTTCGACTACTTCTTCGACTAATGTACCTTCACTTGCTGCGTTAGCTAACGTACTTGGACTTACACCTAATGCAAAAGAATTGGCGCAATTGGGCAAAATCGCAGAATCAGCATTAGCGGAAGTGGTCAAGAACACTAAACGAACTGCTCTCAAGAAGGACTACAAAGTTAAAATCATATCAAACGACGACTTTAACCCCAACGATCAAGTGTTCGTGCAGTTCCATGGTAAAGACAAAGAAACCGACTTCAAGGATTTGACAGACATTTACCAGAAATTCCAAGGCAAAAATGAAGCAGTATTTGACGTCAAAGCTAAGGACATTGACTCACTAGATCACATGTCTATAAAGAGAAAGGTGAATGGACCAAAAACGGACTGGTACATTCAAAAGATAGAAGTGCGCGATCCCCAAGGCAAGGTTTATGAATTTATGTGCAAGTGTTTGTTAGCTAAGGATGTTGGACTGATAAAAACTGCTTTAACATCAAACGTTATCAATGGAGTTTGTGCCAGGGCACTTCCAAGAACGACATACAAAGTAACCGTTAAAACCAGTGAGGGGTTGGACGCTGGCTCTGCACCTGGCGATAAAGTATTCGTGAAACTATTTGGTGATAAACACACAACGGAGTTTAAAGAACTAAAGGGGGACATCAATGCCTTCCAGAGAAACACAGTGTCAACATTTACCATCGACGCGCAAAACGTTGGGAAAATAAGTAGTTTTGCTGTCAAAAAGACTGCAAATGGAAAACTGGACAGGTGGAACATGAAAAAGATCAGCGTCGAAGACGCAAATGGCGACATTTACGAAGCCATGTGCAAGTGCTGGTTTTCCAAAGACGAGGGTCTACAGAGGGCTCTAATTCCAATGAATGTTATTTCTAAACATCAAGACATTGCAGAAACATTACCGGCGATAAAAGGCATATCACCGACGAAAGGCGCCgcatcatcgacccctggtgcatcaccgaccgatggtgcatcaccaacgaaaggtgcatTATTGACCCATGGACCGACGAAAGGCGCTACAAGTGAGAAACCTACAAATGAAATTGGAATTACAGTGGCCAACCAAAAACCGTCGTCAAAGCCGACAAGCGGCACATCTGTGAAAATATTCAAAATGCTAACGAGCAAACCTACATCTGGTGTATCGCATGGTTCATTGGTTGCTAGTCCTTCAACTGAACCCACGAAACAAAGCACAGGATCTGCTAAGCCATCAAATATCGCTAAACCTACTTTGCCTGTCTCGGAAAGCGGGATTTTAAACGCCACAGGGCCAACAATAGCCACGCCTGCCAATATATCCCCAGTTGAAGatctggcaatggagatcctccatgggatcaatgccctacgtctACTACATGGAGCAGGGCCAGTCTTACTAGAGAAAAACATGTCACAAGCAGCTGAGAAGAAGGCGAAGAAACTTTCCTCACCGAGTTCATCAAGGTCCGTTGTTGATGATGATGACAGTGAAAATGGCTACGGATCGAGCATTTGCACCTTCGTCGACGCAGGGTTACCGGCTATTGTACAAGGAAAAAAGTGTGTTTCAGCATGGTACATGACTGTCAAGGACTACGACTGGGCTGCGTCTGTGGTAACTGTAAAATCTGCACAGTTCGCTCGATTGGTTTGGAAGGGAACAACACACATTGGTATCGGGCAAAGCTTGTCAAACAGTACTGATAGTTATGTGGTGGTGTACTTCGATCCGCCGAGTAATAATCTAGAGTCGGCGAGAAATAATATTTCACCTGTGACAGATGTGACCGATGGAAGTTCACAAGAGTGTCTACCAGGCTTCAGCAATAATGGACGATCCTGTTTCGCCTTCCATGAAGTTGCCATAAACTGGGAGTCTGCAATTGCCATGTGTGCAAATCGTGGAGCTGCTGTCGCTTCCATCCAAGCACAAGAGGAGAACACGTTCATTAATGGCATGATAGCTGGTAAAAAGTCTGATGTCACTGGTGAGGCGTGGATAGGTTTCAACGATCGTCTGACTGAAAGTCGTTATCAATGGACTGATGGAACCGCTGCCACATTCCACCAGTTTCTTCCGACTGAACCAACTGGACTTGGAGAAAACTGCGTGACAATGATAAGTTCAATGAACGAAACTGGATGGAAAGATAAGAAATGCTCTGAGGAGTTTCCCGCCATTTGCCGCATGCCTGTTCAAGGGCCAATAACATACAAAATAACACTCCTCGTCGAACACCAAGACGCACCaatcaatgcaccttataattacaatggactagtagggaagtcatttgtccctggcttaataagttatgtcgatctcatcaagcaaaagATGAATGAGTTGGCTGCGCTTCAAGGAAAACCGCTGGAGTTTGTGGGCGATTCATCAATGATTGGCTCAGACGGTGGTTACTACGTCAGTGTGTACCTACGCCAACCTTCGGGGGCCGACCCCAGTCCCGCTCAGCCATTACAAAGTTATCTCGAAAGCAATAACAACCATCTTGCCGACAACAATACTGCTAATGCTACTCTTGCTTGTGTCAATATTGTTTGTGGAGGAAGTGGATGTTATTCCCAGTGCTTTACCACATGTACCGATCAGTGTAGTCCAACGTGTTGCTCAGGCAGCTTTATTATTACACCTCAAGCTCAACCAGCATTGTCTCCAGCACCATACCCATCGccatcgccatacccatcgccctacccatcaccctacccatcaccctacccatcaccctacccatcaccctacccCTATCCATACTCATCCGGACAAGACACTAGTTATTTGGGTTGTATCCGCTCCTGCTCAAGTAAATCATCCAATTCGTTTTGTCCAGCATATTGCCCCAAACATTGTTGCAGACGAAAATGA

Transcript

alvinactis_v1_g29419

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00188	CAP	Cysteine-rich secretory protein family	Domain	Interproscan
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR014044	Domain	CAP domain	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR035940	Homologous_superfamily	CAP superfamily	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR052970	Family	Inner ear hair cell lipoxygenase homology domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45901	PROTEIN CBG12474	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-