Gene detail

Detailed information of alvinactis_v1_g30183 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g30183	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	chr_16	14854823	14859927	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g30183

atgggtgtgttacaagtcactcctgaggtgtggtacctccttgggatggacttgatcgatgcacagaaaagaacaaagaatggaaatcggtacatcatgacggtcacagactatttttcaaaatatgttgaggccattccattacctgaaaaatctgcaacagctgtcgctaaagggatgtttaccttattttgtcgttgtggtgccccggtacatgtgataagtgatcagggaggagagtttgtcaataagtcaaagtatgataactgtgaatgcctaaaatatgtctggaatgttcattgtgttctgaccaatcacatAACTCTCAGGAAACTGGCATCAGAGAACCAAGAGAATTGGGAAGATTATCTAGAAGGTGCTGTATTTGCAATCAATACAAATACCAGTACAACAACCAGATACAGTAGCACCCCAGTAGCACCTGACCCTCAGcctatgaacccagacaacatcaccccaagatcaccagagccacctatgaccccagacaacatcacctcaacatcaccagagccTGAGGATAAGCACAttttgctcaagtggtcccggttagtgtgtcctcactgtaaAAGTGGAGTGTTTTCAGATGAACAGTCTGATCAGTTGGTGGATGCAATTAATGAAGAATTTCCAAACGCTGATGAAGAGGTAAAAAGCAAAGGCCTCTTCCCTGAAGCACTTATTAGAATATGTTCAAGAGCATGTAACATATCAAGCGATGATGCTGAGAAATTCTTAAATAAAAGCAACCTGAGTGAAAGGCAACAAACAACCTCAAGAAGTGTTCCAAATAAGCGTCCTAAGAAGTCAGGTTTATATCATAAAAGCAAGAAGCAAAGGACAAAAGACACAAGAGATGAAGAAGTGCAGTTTGTAGAAGAGAAAAAGAACCCTCTGCCTGCAGATCACATGTTGAGGCCAGACTTTTCTAGCCTCTTGTCTGGAATAGATTGCAGACTTATAACCGGTAATGATGTTCTGAATGATCAGCATATCATGGTGTTCCAAATTCGTTTGCACAAGGAGTTTCCAGACATACATGGCTTTCTCTCTACAGCCATTGGTATAGCAGACCAGTTCCCTCCAATTAATTACAAACGTTTCATTCAAATTTTGCACACAGGAGATTATCATTGGGGAGTCAGGAGCTGGACAAAATCATTAAGAAACTTCCCGAAAATAATTCCTGAAACCTGGTCAGAGTGGTTGGATCGTGGTGGCAAAAAGAATGCCGGAGAAAAGAGCTACAAGTTCTTCCGCGAGGGTTATGTTTACGACATGAGAGAGATCAAAGAGCTTCAGTTTCTCAAGCACATTGTTCATATCCCAGTTGACGCTACTTGTACAAGTCTTCCTCAGTCATGGCACATTCCTAGAGCTAGTTCCATTTGTCCCTTACCTGTAATGGGAACACATTATGCACGTGCAGAAACTGATCGAAATGGAGAGAGGAAAAAATACCCTGTCACTTGTAAATTGTATGAAGCCAGAAGCCCTTCATTTAGATCTGGCTTACCATCTGATCATATCATGAATCAATTACAAGATCATGGCCGACCCAACACAAGGTTCTTGAATAATTTTGTTATTATCACTCCTGGTAACAACCCAGTTGTTGGCCTACAAGGTATCCATTATCCAGATATCCCTCTGGTTGGACCAGACATGCAAGAGTTTGATTTAAATGAACTCTCTGTTTTAGATAGAAACTATTTACCAGCCAGAGAGTATTTTATTGACCACATTATTATTGATACTGATGAAGCTCATGCTATGGAAAAAAGAACAATATTGCAAGGCGAATCTCAAGAATGGCTTAATCAACACAACATCAGACTAACTGCTTCCTGTTTTGGTAAAGTTTACTTTCGTGTTCAGAATCCCTCTGTGTCAATGTTGAACAGTGTTTTTCTTAATAAAGATCTTTCTAATGTTAGAGCTATTTCACATGGTAAAACTAAAGAAAAAGTAGCAAGAACAATCTATGTAAGAAAGATGCAAAAGGAAGTTTCACAATTTGCAGTATTTGATGCTGGCCTAATCGTACATCCATATTTGCCTTATCTTGGAGCAACTCCTGATGGAAAAGTATATGATCCATCTACTGGCACAAAACATGGCTTGCTTGAAATTAAATGTCCATTTTCAAAGAGAGGCGAGACACTGGAACAAGCTGCAGAAGATCCAAGGTTTTACCTTCAAAAGGATGTGCATCATTTTTACCTGAAGAAGCATCACACATGTGGATACTATGCTCAAGTACAAGGCCAATTGGCATTGTCTGGACTTACATGGTGTGATATTTGTGTTTACTTATCTGATTCCAATGAAATGTGTGTGGACAGAATTTATTTTGATAACAATTACTGGAAAAATGATCTATTGCCTAAACTATCACAATTCTATTTTCATCATGCTTTACCATTTGTCATGGCCAGAACTAGgtag

Transcript

alvinactis_v1_g30183

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR051703	Family	NF-kappa-B Signaling Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46609	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-