Gene detail

Detailed information of alvinactis_v1_g30796 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g30796	THREONINE SYNTHASE-LIKE 1	chr_17	3520661	3530371	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g30796

ATGAGCGCTCTCGTAAGGCAATTAAATAGAGGCGAATGTTGGCAGTATTTCGGACGCAGGACTTCGCAAAGAATCTGTTGTTCAGTACTTGGACAAACAAGAGGTCTAGCAACAGAAAATAAGGAAGAGCTCAAGAAGACAGCACTTTATGATTTCCATCTTGAACATGGTGCAAAAATGGTGCCATTTTGTGGCTGGTCGATGCCTGTGCAATACAAAGAGGGTGTGATGAAGTCACATCTACATGTTCGTCAGCATGCTGCGATATTTGATGTCACACACATGTTGCAGTTTAAGCTACATGGCAAGGATAGAGTCAAGTTTTTGGAGAGTCTTGTTGTGGCTGACATAAAAGGTCTTGAAGAAAATACTGGAACATTGTCTTTATTCACTAATGAAAATGGTGGGATTAAAGATGATTTGATTATTAATAAAAAGGCTGATGAACTGTATATTGTATCAAATGCTGGATGTGCAGATAAGATTACAGCTCACTTGATTgagaacttaaatagagtttctagcagtcaagatgttggtcttgaatttttagagaatagaggtcttttagctttaCAAGGTCCCAAAGCAGCCCAGGTTCTACAAGACGGGGTGGATGGTGATCTATCGCAATTAACATTTATGAATGGCACCACAACTACTGTGTTTGGCATAAAAGATGTGAGGATCACAAGGTGTGGATACACAGGAGAAGATGGTTTTGAGCTGTCAGTAGACAAAGATCGTACAGTGGATCTTTGTAACTCTATGCTGGGCTGTCAACACGTAGAGGTCCAACTTGCAGGTCTTGGTGCTAGAGACACTCTACGTTTGGAAGCTGGCCTGTGCTTATATGGTAATGATATTGATGAAGATACCATGCCACCATCGGCAGTACTGGTATGGACAATAGGCAAACGTAGACGACAAGAAAAAAACTTCCCTGGTGCAGACATTATTCAGAAGCAAATCAAAGACAAACCCAAGCAGAAAAGAATTGGGTTAATGTCCACAGGAGCTCCTGCTAGAGGAGGTGCAAAGGTACTTGATGAGGATGGAAACGTTATTGGTCATGTGACAAGTGGTTGTCCTTCGCCAACCTTAAAACAAAACATTGCCATGGCGTATGTTGACACTTCAAGATCCAAAGTTGGGACATCTCTCCAACTTGAAGTCTACAAGAAAAAAATACCCACAAAAGTTGTGAAAATGCCTTTTGTACCAACAAATTACTATTTTGGAAAATTTTCATCTAATGGTGAATTTCGTGAATGGACTGGATTGGAAAACCACAGGAAGCCCAATACCGCTAAATCTGTACCGCTAAATCCATCAAATTGTTTTTCATCAAATCAACAGAGAGGCAATAACATTATCCTCATGGGAAGTCCTGGTGCAGGGAAGACGACCATTGGTAGGATGGTAGCAGAAAGTCTAGGAAAGCAAGTTATTGATGTGGATAACGATCATTTGGAAAAAGTTTGGGGAATGGCGGTAGCGCAAAAGTTGACTGATGTTGGTTCAAATGGCTTCATAGAAGCTGAAGGTCAAGCCTTGTTACAACTATCGTGCGATAACTCTGTTATATCCCTCTCTGGGTCCAATCCGATGTACAGATTGGCTATGTCACATGTTCAAGCGCTAGGAACTGTTGTTTATCTAGACGTGGATGATTCTGATATCTTGGACCGTCTGGAAAGAATGAAAGTCGACCGAATAGTTGGACAGAATGATGGTACGACTATGGCTGAGATCCTCGAGTACAGAAAGCAGTTTTATGAAGGCAGTTACGACGTACGGGTCACCTGCGAGGCAAATGAATCGCCGGAGAGTGTCACTCGTAAAGTCATTGAAAGTGTCAAATCACTAGATAGAGGTACTAGATATGTCAGCACAAGACAGCACAAAGATGTTTTAGACAAGAAAAACTTTCTGGATGTTGTTCTTGAGGGACTAGCACCAGATGGAGGGCTTTATGTTCCTGACCAAGACATACCACGAATGACTTTAGGAGAAATCGAACGTCTTGTACCTTGTACTTATCAAGAACGCGCTCTACGAATATTAGAACGGTTGATCCACCCTCGTGACCTCCACCCTTCAATGCTAAGGCAAATGATTGACAAAGCGTACCATACAAACTTCCAACATCCGGGCATTGCCCCTGTAGTAAATCTGGACAAACAGGTTTTTATTCTTGAGCTCTTCCACGGTCCCACAGCGTCATTCAAGGACCTCGCTCTGCAACTCACACCCAACTTCTTCAACAAGGCCATCAGTTTATCTTCAACGAAGAACACAAAATACCTAATTCTCGTCGCTACATCTGGAGATACTGGAAGCGCTGTACTGGAGGGATTTCGCGCCAACAAGTCAACCGACGTTTTTGTTCTTTATCCTTCAAACGGCGTTAGCACAACTCAACGAAGACAAATGATTACTGCAAATAGTTCAAACGCTGGTGTCTTAGGCGTTGATAGCGATTTTGACTTCTGTCAGTCATCCATCAAGCAAATCTTCAGTGATACTGCATTCAGTGAAAAACTTCAAAGTGATTACAATGTGAAGCTATCAGCCGCTAATTCTATAAACTGGGGTAGACTCGTCCCTCAGATTGCCTACCACGCCTCGTCGTACTTGGAGCTTGTGAAGAACGGTATCATTAGTGCTGGGGAAAAAGCCGATGTCTGTATACCAACGGGTAATTTTGGCAACATTCTAGCCGCGTACTATGCTAAGGAAATGGGAATCCCGTTTGATAATATCATTTGCGCATCTAATGTGAATAACGTCTTGACTGAATTCTTCCATAACGGTATTTATGACATTCACAAGAGAAACCTGCATCGTACCGTATCGCCATCAATAGACATATTCAAGTCGTCCAATCTCGAACGATTTATATATCACGTGACGTCACGCAACGCAGAACTGGTCACGCAACTATTCAAGTCTTTGGAAAAAGATGGCACTTTCCAGGTTGGGTCAAAACTCCACAATACTCTATCATCTACCATTAAATCTGGATGGAGTGATGAACAAGGTTGTCTAACTACAATCCAAACAGTGTTCAAACAGAGAGGATACCTGCTTGACCCCCACACAGCAATTGCCAAAGCTGTAGCAGATAACTTCATTTCCCCTCACAAGCCCATGGTAATATCAGCTACAGCGCATTATAGTAAGTTTGCAGACAATGTTCTCAAAGCTTTAGGGAAAGAACAAGGCTCTAGTGACCCCTTGGTAGTGATGAGCGAGTTACGTAGGCTTGAGCCACACCCTCCAATGCACCAACAACTTGAAGATGCAATGAAGAAGCCTGAGATACACAATAAAGTTTGCGAAGCTGATGTGCAGACAATCAAAGAACACATTGAAATCTTCCTGAGAAATCAATGCCATTAG

Transcript

alvinactis_v1_g30796

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01202	SKI	Shikimate kinase	Domain	Interproscan
PF01571	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF08669	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan
PF14821	Thr_synth_N	Threonine synthase N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000623	Family	Shikimate kinase/Threonine synthase-like 1	Interproscan
IPR004450	Family	Threonine synthase-like	Interproscan
IPR006222	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR006223	Family	Glycine cleavage system T protein	Interproscan
IPR013977	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan
IPR027266	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029043	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan
IPR029144	Domain	Threonine synthase, N-terminal	Interproscan
IPR031322	Family	Shikimate kinase/gluconokinase	Interproscan
IPR036052	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR037158	Homologous_superfamily	Threonine synthase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43515	THREONINE SYNTHASE-LIKE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004047	Molecular Function	aminomethyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006546	Biological Process	glycine catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-