Gene detail

Detailed information of alvinactis_v1_g30926 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_17:5281708...5295554
NR annotation: XP_020907089.1, bromodomain-containing protein 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g30926

ATGGTAAGCATCAGAGAACTGATTGATAATCTTCGCGCTACAAAGCCGCCCTACGAGTGCCCTTTGTGCCAAAAATTTTATAAAAGCTACAGCGGAATTGAATATCATTTGCAAAACTTCAAGCACGATGGCTCTGATGTTCCTCTTCCTCCGTCTTCGTCCAAAAAGAGCAAAGGTAGAGGACGAAAAAGCGTAAAAACCGGTAAAAATAAAAGGCCGCCACCTTCACCACCACAAGTTGTTGTCCGTGAAACGCTTACATACGCTCAGGCACAACTTATAGTTGAAGTCGAACTGGAAGGGTTAGCACAGAGAATCGGTATAGATGATAGTCTGGAAGTTTTCGAAGAGCAGGGACAAGAGCTTGAGAAAGGTGAAGCGTCTATACAACATGTTACGCCGAAACCTATCACGAAAACTAAAAATAAATCGGCGAAAAACGAAGTTGAACGAACACCGTCGCTACCGAAGTCTGATTACGTTGAAAAGGGTGATTTTCGTCATCCCGATGCTCCAACCAGACCAACTACATATTTTCGATTTATAGAACAAACCACAGAAGAGATGGATGAAAATGTTGAATATGACATGGACGAAGAGGATTACTCCTGGCTGGATTTGATCAATGAACAGCGCAAGTCTGACAACATTGCCCCAGTCTCTCAGGAGGTGTTTGAAAATTTGATGGACAGGCTAGAAAAGGAATCTTACTTTCAGAGCCAAACCACTTGTGATCCGAACCAGTACATTGATGAAGATGCAGTGTGTTGCATCTGCAATGACGGCGAATGCCAGAACAGCAATGTAATTCTATTTTGCGACATGTGCAACTTAGCTGTCCATCAAGAGTGTTATGGGGTCCCATACATTCCCGAAGGGCAGTGGCTGTGCCGACGGTGTCTGCAGTCACCATCTAGAGCGGTGGACTGCGCCTTATGTCCCAATAAGACTGGCGCATTCAAGCAAACAGACGACGGTCGATGGGGACATGTAGTTTGTGCTCTGTGGATTCCTGAAGTTTGTTTTGCAAATACTGTTTTTCTTGAACCTATTGACTCCATAGAAAATATCCCCTCAGCTCGCTGGAAACTTACGTGTTATATCTGCAAGCGTCGCCAGGGTGCAAGCATTCAATGCTTCAAAACTAACTGCTATACTGCATTTCATGTTACTTGCGCACAACAAGCAGGGCTATTCATGAAGATTGAACCCATCAAAGCGGAGAATGGACAGTTAACTGTGCGCAAGACAGCCTATTGCGATGTTCACTCCCCTGGTAACTTAGATCAAGAGAAAGAAGTAGAGAATGACAGTGAGGAAAAGCTTCTACCAATAAAGAGCAAACTACCAACAAAGAATGGCACTTCTAAACGTAGCATCAAGAAGTTTAGAAAGCTTTTGGCTGAGAAAAAGACTATGCCTGTGCCTGTTGTCAACATTCCTTTCATCCCCGCTCACAGACTCGGCAAGATTGTTAGCAAGGTTGCCATGGCGAGAAAGGCTCAGTTTGTCCAGGCCTTGCAGAGTTACTGGATGCTGAAACGACAGTCAAGAAATGGAGTTCCACTCTTGAGAAGATTACAGGCTACACATCTCAGTCAAAAAGGAGGCGGCGATGAGTCAAGTGAGAGATCTGAGAGGATTAAAGCTATGAAAGAACAGCTACACTTCTGGCAGAGACTAAGACATGACCTTGAGAGAGCCAGACTTCTGGTGGAACTGATCAGAAAGAGAGAGAAGCTAAAACGTGAACATGTAAAGGCGAAGCAGCATGTAGTTGACCTACAGTTGCAGCCGTTGAACTTGGTGTTGAGAAAAGCCATGGATCAGATCCAGACTAAAGACCCTGGTGATATCTTTAGTGAACCTGTGGATCCTAGTGAGGTTCCTGATTACCTTGATGTCATTGAAACCCCAATGGATTTCTCCTGCATGAGGTCTAGAATAGAGTCCAACTTCTATCATACTGTTGACCAGTTTGAGGCAGACTTCAATCTTGTCATTGAGAACTGCATGCAGTATAATGCTCCCGATACCATCTACTACAGAGCTTCATTGAAACTACGTGACCAGGGAAGACCAATCATTCGTGCCTCTAGGAGACAAGTTGAGCGAGCAGGAATAGATCCTATGACTGGGCTACACACAAAGGAAGCCCCTACACTTGCTGATAGAGAACCTACTGAAGAAGATTTCATTTTGACTGAAGAACAGCGAAAAGACATGAGTTTGGAGGAACAGCTGAAGGATTTGACTGAGAAACTTGACATGACTCAAGCAATCAAACATGGAGGTGTAAGAGCAACACGAGTACGAATGGTGCGTAAAGAGATGGCCCTCGTGAGAAGGAAGTTGAATCAGGAAAGAAGGCGTTTCTCAGAGTCGAGTGTGGGTACTGCCAACGATGACAGACACTCCAAACCGTTCGACATATGTACCAGTGAGGACTCCACGACCGAACAACCACCAAGTAAAAAACAACGTTTAGAGGACACACCTGGACCAGAAGGCGACATGGCTACTGCGCATACTCATGGAACTATAACCATTGAACCAAAAGCAGCGATAGACTCGGCGGCTTCCACAGCAACCACGAACCCCAGCCCTGGAATGAGTCGGCGCAGTGGAATCTTGTTCAACAAGGGTAGAAGTCGCGTACGACGCAACTTGAACGTAGCCAGCGAGAAATATCTAAACGACGTGGCGTCTATAGCGAATCACGTACTACAGCCTGTCAATCACGAGAAGAACACGGAGATCACGATTACGGAATCGCAAATCACGCAGAATCACAGAACAGACGTAACGCGCAACTCCGACGTCTTTTTAGACGAGAAAAACCCTATCAAAGAACCGAGCCACAAATGGCGTAACGATAGCTTGAGTAGCAATGAAGGGACGTACACGCACAGAAAACCTTATAAGACAGAGCTCGGGAAACTTATAGAGGACGCAACATCGCCCTTGTACGAGTCTCATTCCGATAAACTAAGCTTTGCTTTTACTAATGGTTTACGGCAAAGGAACTATCGGACATACACCAGCGAATCTGAATCAGATAACACCGACGTACGAGCGAATGGTGGCCGACAGAGACGAAAGGGAAGACTTTTCTCTTCTATGTCGGAGGATGAACAAAGCACGACAGACACTGAGGTCAGTGCGATGGAGAACAGGGCAGTAAATGGACCTATCGATGAGTCGAATAAGAAGAAGCGTCCTAGGAAGACTACTACTGATTCTGATATGGATTTGACACCGTTAGAGCCACTGGAGTTGGTGTGGGCAAAGTGTCGTGGATATCCTTCCTACCCGGCATTGATCATTGATCCCAAGATCAAGAAAGGACTTATTTACAACGGTATTCCTATTCCCGCTCCACCTGAAGAAGTCATGAGAGAAAAATCGGTAACTGACGACTCGCTTTATCTGGTTCTTTTCTTTGACACAAGACGGACATGGCAATGGCTTCCTCGACATAAACTAGAACTACTAGGAACAGATAAAGCGAGAGACGAAAGTAAACTACTCGAAGGGAAAAAGTTATCGATGAAGAAGTCATTACAGCAGGCGTACGAACGAGCGATCATGCACCAGAACCAAGTAGAGGCTGGGCGACGAAACATGGAAGCAgacgacgaagacgacgatgacgacCTTAGTGAAAATGGCTTTGACTAA

Transcript

alvinactis_v1_g30926

Protein

Uniprot

Uniprot term	Description
P55201	Peregrin OS=Homo sapiens OX=9606 GN=BRPF1 PE=1 SV=2
B2RRD7	Peregrin OS=Mus musculus OX=10090 GN=Brpf1 PE=1 SV=1
B2KF05	Bromodomain and PHD finger-containing protein 3 OS=Mus musculus OX=10090 GN=Brpf3 PE=1 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13831	PHD_2	PHD-finger	Family	Interproscan
PF10513	EPL1	Enhancer of polycomb-like	Family	Interproscan
PF00855	PWWP	PWWP domain	Domain	Interproscan
PF13832	zf-HC5HC2H_2	PHD-zinc-finger like domain	Domain	Interproscan
PF00439	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR000313	Domain	PWWP domain	Interproscan
IPR050701	Family	Histone Modification Regulator	Interproscan
IPR018359	Conserved_site	Bromodomain, conserved site	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR001487	Domain	Bromodomain	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR019542	Domain	Enhancer of polycomb-like, N-terminal	Interproscan
IPR034732	Domain	Extended PHD (ePHD) domain	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR042008	Domain	BRPF1, PHD domain	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13793	PHD FINGER PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070776	Cellular Component	MOZ/MORF histone acetyltransferase complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11348	BRPF1; bromodomain and PHD finger-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala