Detailed information of alvinactis_v1_g31407 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_17:13234206...13243567
NR annotation: XP_031570547.1, protein SEC13 homolog isoform X2 [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P55735Protein SEC13 homolog OS=Homo sapiens OX=9606 GN=SEC13 PE=1 SV=3
Q3ZCC9Protein SEC13 homolog OS=Bos taurus OX=9913 GN=SEC13 PE=2 SV=1
Q9D1M0Protein SEC13 homolog OS=Mus musculus OX=10090 GN=Sec13 PE=1 SV=3
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037363FamilySec13/Seh1 familyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11024NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0030127Cellular ComponentCOPII vesicle coatInterproscan
GO:0031080Cellular Componentnuclear pore outer ringInterproscan
GO:0032008Biological Processpositive regulation of TOR signalingInterproscan
GO:0032527Biological Processprotein exit from endoplasmic reticulumInterproscan
GO:0090114Biological ProcessCOPII-coated vesicle buddingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14004SEC13; protein transport protein SEC13-Membrane traffickingko04131deepkoala

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