Detailed information of alvinactis_v1_g3369 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:9003744...9028775
NR annotation: XP_028515649.1, helicase-like transcription factor [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6PCN7Helicase-like transcription factor OS=Mus musculus OX=10090 GN=Hltf PE=1 SV=1
Q14527Helicase-like transcription factor OS=Homo sapiens OX=9606 GN=HLTF PE=1 SV=2
Q95216Helicase-like transcription factor OS=Oryctolagus cuniculus OX=9986 GN=HLTF PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF13920zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF13202EF-hand_5EF handDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR050628FamilySNF2/RAD54 Helicase and Transcription FactorInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45626TRANSCRIPTION TERMINATION FACTOR 2-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0008094Molecular FunctionATP-dependent activity, acting on DNAInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11643CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4EC:5.6.2.-
Chromosome and associated proteinsko03036deepkoala

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