Detailed information of alvinactis_v1_g4780 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:31013017...31030186
NR annotation: XP_020905564.1, E3 ubiquitin-protein ligase parkin [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O60260E3 ubiquitin-protein ligase parkin OS=Homo sapiens OX=9606 GN=PRKN PE=1 SV=2
Q9WVS6E3 ubiquitin-protein ligase parkin OS=Mus musculus OX=10090 GN=Prkn PE=1 SV=1
Q9JK66E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus OX=10116 GN=Prkn PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyULD|UFD/UBQ|UBQ_PIM
Ubiquitin FamilyE3|E3 activity|RBR

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17976zf-RING_12RING/Ubox like zinc-binding domainDomainInterproscan
PF00240ubiquitinUbiquitin familyDomainInterproscan
PF17978zf-RING_14RING/Ubox like zinc-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047534DomainE3 ubiquitin-protein ligase parkin, BRcat domainInterproscan
IPR044066DomainTRIAD supradomainInterproscan
IPR047535DomainE3 ubiquitin-protein ligase parkin, RING finger, HC subclassInterproscan
IPR000626DomainUbiquitin-like domainInterproscan
IPR003977FamilyE3 ubiquitin-protein ligase parkinInterproscan
IPR041565DomainParkin, RING/Ubox like zinc-binding domainInterproscan
IPR041170DomainRING/Ubox-like zinc-binding domainInterproscan
IPR015496FamilyUbiquilinInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10677UBIQUILINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0031593Molecular Functionpolyubiquitin modification-dependent protein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04556PARK2; parkinEC:2.3.2.31
Mitochondrial biogenesisko03029deepkoala

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