Detailed information of alvinactis_v1_g7064 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:24237590...24268586
NR annotation: XP_020894539.1, pre-mRNA-processing factor 19 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q99KP6Pre-mRNA-processing factor 19 OS=Mus musculus OX=10090 GN=Prpf19 PE=1 SV=1
Q9JMJ4Pre-mRNA-processing factor 19 OS=Rattus norvegicus OX=10116 GN=Prpf19 PE=1 SV=2
Q08E38Pre-mRNA-processing factor 19 OS=Bos taurus OX=9913 GN=PRPF19 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08606Prp19Prp19/Pso4-likeDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF05351GMP_PDE_deltaGMP-PDE, delta subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR013915DomainPre-mRNA-splicing factor 19Interproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR003613DomainU-box domainInterproscan
IPR037036Homologous_superfamilyGMP phosphodiesterase, delta subunit superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR008015DomainGMP phosphodiesterase, delta subunitInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR038959FamilyPre-mRNA-processing factor 19Interproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43995PRE-MRNA-PROCESSING FACTOR 19Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000974Cellular ComponentPrp19 complexInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071006Cellular ComponentU2-type catalytic step 1 spliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10599PRPF19, PRP19; pre-mRNA-processing factor 19EC:2.3.2.27
DNA repair and recombination proteinsko03400deepkoala

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