Gene detail

Detailed information of alvinactis_v1_g7451 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_3:30052572...30067918
NR annotation: XP_020909763.1, AFG1-like ATPase [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g7451

ATGCTGAGCTGCTTGGAAGAGCATCTTCGTAATGCTGGCACAGGTAAGAGGATCTCTACCAGCTCGTCGACACAGAGAACGGAATCAAGAAGTTCAGAGAATGGAGGTTCTTCTCCCTCGCCTACAACCCCGCCGAGTACACCTACAGCAACAAGTCTTGCGCACCTTCGTGTTGAGCTAGAAATGAAGAATCTCTGGGATGAATTCTATGCTCTTGGAACTGAGATGATAGTTACTAAAGCGGGCAGGAGAATGTTCCCTCCTTTTCAAGTCCGTTTATTTGGTCTGGATCCCAACGTTAAGTATATCTTGATGATGGACTTTATTCCAGTAGACGACAAACGATATCGCTACGCCTTTCACAGCTCCAAGTGGTTAGTGGCGGGAAAAGCTGATCCTAGTGTTCCTGGACGCGTTCACATTCATCCTGATTCACCGTGTACTGGCGCCCAATGGATGAAACAAATTGTGTCTTTCGACAAACTGAAGTTAACTAATAATCTCATGGATGACAATGGACATATTATCATGAATTCCATGCACAAGTACCAACCCCGTTTTCACATAGTTCTCGTCACATCGGACAAAAACACCAACGACAATATTCATGACGTGAAAAGGGACCACATTCGTACATTTGTGTTCAACGAATGTCAATTCATGGCCGTCACGGCTTATCAAAACCACATGATAACTCAGTTGAAAATTGCCAGTAATCCTTTTGCAAAAGGGTTTCGTGATTGTGACCCGGATGATTGTGTAATAGAAGTGATGAAACAAATGGACCCATCATGTATCGCGTCCGCTGGTAGACTTCGATTATCCACTGATTTGTATCCATCACCGACAAGAACAGAAGCTTCTGTAGAAGACCGCAATGCACTGATTGCTGGACGACAGTGTAGTATGGTCAACATGGACAAATCATACCCACAACAAGTCTTGACGTCACGTATAAGTGTTACTGTCCCTGGAGGGGTGGAGTTAGCGAACTATACTGTATCTTCGCCTGTCAATCATCCTACATCGCCAGTCAATTCAACAGCAGTATACCGGGGATTCCCAGCACTACGAGACCATCGAAATGCACCATACCCGACAGACGAATGTCAACAGCAAGCTGTGATCAAACTACAAGATTTATACGATCGAGTGAAGCATTACGAACCCAAAAACATCAAAAAAGCAAATCCAGGTACTGGCAATGTTCCTAAAGGTCTGTATCTGCATGGGAGTGTCGGCAGTGGTAAAACAGCTCTCATGGACATATTCTACGACTCTGTTGCAACACAGCATAAAAAACGTGTCCACTTCTACTCATTCATGCTTGAACTTTACTCTGAACTAAACCGCTGGCATTTATGCTGTTTGAATGACGAGAGCACCTTTGATACAACACCAATAGAAATACTGGCTAATCATTTAACAGATGAAGCATGGCTTCTGTGTTTTGATGAGATACAGGTATCTGATTATGGTGCAGTTAGACTGTTGGAGGGAATATTTCAGAATATGTTTAACAGAGGTCTTGTTGTCGTAGCAACATCAAACAGATCATCAACTGATCTTGGTGTTTCATCATTTGGGCATGAATGTGATGGTCAAGAGTCTGTATTATCCCTTATGGGTCTACTAAGTGCTAATTGTGAAGTGGTTTGCATGGATACTGGTATAGATTACAGGAATTCTCAAAAACGAGGTAAAAAGACCTACTTTTACCCCATCAATGCTCAGACTGAAAAAGACTTCAATGAAGCTTTTTGTGAAGTGGTTGGCCTTAGAACACAACTAATAAGGACAGCACTGCCAGTGTATGGCCGTCATGTCATTGTACCAGTAGCTTCAGTCAATGGTGTGGCCAGATTTTCCTTTGATGAACTCTGTAAATCTCCTCATGGTCCTGCTGATTACATCACTATCTGTAACAATTACCACACGATATTTGTGGAGGGCATACCTCAGTTGAGCATTTACCAGAAGAATGAGGCAAGGCGAATGCTAAGCTTTGTAGATGCAGCATATGAGAGCAAAGTAAAGGTTTATTGTTCAGCAGCTACAGCACCAAAGGACTTGTTCCAACTTATTCCCAAAGAAGACGAGTCATATGATGATAAAATGCATTTAGAGATGATAGGAGAGTTGGCTTATGACCTACAACTAACCAAATTCAACCTAAGATCTCTAGGAATTCTTACTGGTGAAGATGAGATCTTCTCATTCAGACGGTGTATTTCTCGCTCGAATGAAATGCAGAGTGATTTCTATCAGCATTCTCAACATAAGCCTCAGCTGTTTGCTCCCTATGTAGGCACTGCTGAGGAGAAACATGCTTCAGAACTGCACAGAAGAAAATGA

Transcript

alvinactis_v1_g7451

Protein

Uniprot

Uniprot term	Description
Q32NI9	T-box transcription factor TBX1-B OS=Xenopus laevis OX=8355 GN=tbx1-b PE=2 SV=1
Q3SA49	T-box transcription factor TBX1 OS=Xenopus tropicalis OX=8364 GN=tbx1 PE=2 SV=1
Q8AX98	T-box transcription factor TBX1-A OS=Xenopus laevis OX=8355 GN=tbx1-a PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907	T-box	T-box	Domain	Interproscan
PF03969	AFG1_ATPase	AFG1-like ATPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005654	Family	ATPase, AFG1-like	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan