Gene detail

Detailed information of alvinactis_v1_g837 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_1:14255408...14283277
NR annotation: XP_020917379.1, SWI/SNF complex subunit SMARCC2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g837

atggcaccagccgcatcggagGAGAACTTTGGTCGCACTGTAGCCAAGCCTCTATTGACAAAACTCCCAATCAAACTATTCCAAGACTTTTCTCCAGGTGGTGGTCTGTGCACAATCTTAACAACGGTGTATAAGACCAAGACAGAGCAAGGATGGAGGAGACTTGACTTTCAATCTCCATCAAGAATGGACAGGAATGTCGAGCTTTTCTTGAATATTGAGAAATCTCTCAAAGAGAATAAACTTTTAAATATTCCTCAGTTGTTCTTTGCACCTGATGTTGATCCCAGATTGATTGCACATCTAAAAGATATTGCAAAGAGACATAATGCTGCTGTGGTTGATGAGAAAGCATTGGctacacatgttgtgcatggaccaccaccaccaatgactgaagAGGATTGGTTGCGGCCCCTAAAGAAACAAGAAGACCGGGTTCTTGTCCACTGGTGGTATTATCCCGACAGTTATGATACTTGGGTATCTAACAGTGATGTCATTGATGAACCACAAGAAGAACCTCTACATCGTGGCTCATGGGAGGTAAATGCTCGATGGTTAACAGACTTAGATCGATTCAACGAGTGGATGAATGAAGAGGATTATGAGTTAACTCAAGCAGAAATAGAGAGTGGCAGTGTAGGAGCAACATCACCATCACATGGCCGACGGAAGAGTTTCCGCAGTGGTGCCTCGAGTTCAGAGGAGCCTTCCAGCCCAGACGCAGCCATAAAAGCTAAGAAAAGAAAACGTAGTCCCTCACCAGAATCAAAGAAGAGAAAGAAAAGCATCATGAAACCACCAGGAATAAAAGAAGAGGAAAGTGATGATCCAACCAAAGATATGCCAGATCCTCCACCAGTACCAAATGTTGAAGAGATTGCAATCCCAGCCTCAAGTAAAGGAAAAGAAACTGATCTTCAACCTGTTAAAGGAGGATCTTTTACTGATATATCAGAAACTGGTGGAAATAGTGATAAGGCTTCAGAGGCTGGTGAAACAGAGGACCAGCCCGAGGAACCCTACGCCCACACCTCTGCACCAGTATCACCGTCACAATCACAGCCTGAAATATTTAAAGAACCATTAACTCTACAAGACACTGAACCACATGATGATAACCTTACCGAACAGACCCACCATATCATTATTCCTAGTTATGCTTCTTGGTTTGATTATAATTGTATTCATGCCATTGAGAGGAGAGCTTTACCAGAGTTCTTCAATAACCAGAACAAGTCCAAAATTCCTGAAATATACCTTGCCATCAGGAACTTCATGATTGATGCTTACAGACTTAACCCTACTGAGTACCTAACAGCTACAGCCTGTCGCAGAAATCTAGCAGGCGACGTGTGTGCTATTATAAGAATCCATGCATTCCTGGAGCAGTGGGGTCTAATCAACTACCAAGTAGATGCTGATGCCCGCCCAGCACCAATGGGACCCCCATCTACATCACACTTCCATGTGATGGCAGATACTCCTGCAGGATTGCAGCCATTACAGCCACCAAAAAGCATGATTTCAGCCTCACAACAGATGATGCAGTTTAAAGATGAAGGAATGAACAaagacatctgtatgtcccctgcaagtagtaccagctttggCCTCCACACAGACCAGTATCTATCAAAGAAGAGCCAAAAGGCTGCCACAGCAACTAAGGAATGGACTGACCAAGAAACACTATTACTCTTAGAGGGTATGGAAATGTATAAAGATGACTGGAACAAAGTAGCAGAACATGTAGGAACACGTACACAAGATGAATGTATCCTTCACTTCCTACGGTTACCTATAGAAGACCCATACCTTGAGGATATGAAACTAGGCCCGTTATCCTATCAACCCGTCCCATTCAGTCAACAAGGAAATCCCATCATGTCTACCGTTGCATTCTTGGCTTCTGTTGTGGATCCACGAGTCGCTAGCGCTGCAGCTAAGGCTGCattggAGGAGTTTTCGAAAATGAGAGATGAGATTCCTGAATCAGTCATTGAGAGTCATGTGAAAAAGGCTGCAAATGCTAAACCTGTTAAGGTGAAGGACGAGCCTACAAGTGGGGAGGACACTGCACCAGAAGAAGGACCAATGGACGTTGATGAGGTTGAAACCACTAAACCAACACTAAGTGAAGCTGGTAACACCCAGAAAAAGGACGAGGATTCAAAAAAAAATGAAGATGCACCAGAGTCGGCATTAGAGATCAATGGTGAAGGGGAATCCAGCAAAACAACTAAAGCAGAAAACAGTAAAGAGGGCAACATTGCCActgctgctgcagcagcgttagcagcggcagctgTCAAAGCGAAGCATCTTGCACAAGTGGAGGAAAGGAAGATCAAGAGTCTAGTGGCTTTGCTGGTGGAAACGCAAATGAAAAAACTCGAAATCAAACTGCGTCACTTTGAAGAACTGGAAACCATCATGGATAGAGAAAGAGAAGCGTTAGAATATCAACGTCAGCAATTATTGGCAGAACGTCAACAGTTCCACCAAGAACAGTTACGAGCAGCTGAGTTGCGGGCACGTGCTGGCTACGTGACGTCACCATTAGGTACCCCTAGTCAGCAACAGAATGGTCCCCAGGCCCATGCTGTACCACAGCAACCCTCCACACCACAGCCAACCCAATCATCACAGCCTACCcagcaacaaccacaagtacaacttcaatccaaacaactaccacagaatcaacaacaacaacaacaaccgcacaagtttccacaacaaccccaacaacagacaTCCAGCCCATCCCAGGGACAGTCACAGCCATCGCCTTCATTTATGCATCAACAATACCAGATGTTACAACAACAACAGCAAGGACAAGACCAGACGGGTCGATCACAGCCGACATCACAAGGTCAGGTTCATATAACCACCCAAGCCACGTCACCAGTAGCTGCTTCTCCACTTATGATAAACCCAGGCTCAGTTAACTCGATTAGTTCTCATCCTGCATCAGGATGTAGTACTCctgcttcctacctcggctctgcctctgcctcCCCTGTACCACAAGGACATGGACCGAGCACACCGGGGAGTGTGGCTACAGGATCTGTGGGTCCAATGTCAATGGGCGGGGCAGATGGCATGGGGTCCCACACTTCATCGCCGGCTACCCCAGCCAGTGGACCAGTGGAATAA

Transcript

alvinactis_v1_g837

Protein

Uniprot

Uniprot term	Description
Q8TAQ2	SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1
Q6PDG5	SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2
P97496	SWI/SNF complex subunit SMARCC1 OS=Mus musculus OX=10090 GN=Smarcc1 PE=1 SV=2

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16498	SWIRM-assoc_3	SWIRM-associated domain at the C-terminal	Family	Interproscan
PF04433	SWIRM	SWIRM domain	Domain	Interproscan
PF16495	SWIRM-assoc_1	SWIRM-associated region 1	Family	Interproscan
PF00249	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF16496	SWIRM-assoc_2	SWIRM-associated domain at the N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049898	Domain	MarR-like, BRCT and chromo domains module	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR032448	Domain	SMARCC, SWIRM-associated domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR007526	Domain	SWIRM domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR032451	Domain	SMARCC, C-terminal	Interproscan
IPR017884	Domain	SANT domain	Interproscan
IPR032450	Domain	SMARCC, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12802	SWI/SNF COMPLEX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0016514	Cellular Component	SWI/SNF complex	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11649	SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C	-	Chromosome and associated proteins	ko03036	deepkoala