Gene detail

Detailed information of alvinactis_v1_g8819 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:15784761...15815515
NR annotation: XP_020900042.1, paired amphipathic helix protein Sin3a [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g8819

ATGAAAACGCGACCTAAAGAGATTCAAGTGGAAGAGTTTGTGGCTATATCAGAGAGTGTTTCTGATGTAGTCCATCCGCAAGACATGAAGAGAGGTAGACCTGAAGATCATGAGGGAGTATTTGGTCAGCGTCGTAGCTTTCAACAGCACCCTGTCTTAGCTCCAGCACCAGGGGCACTTCCTAGCTTTGAAAATGTACAAGATACAATTGTTGCAAGTTCCTTGACTCAGTTTGGGGCATCCGCAATGACTACTCAAGGATTTCAAGTTCAAACCCAACAGGCACAAAACCATGGCCAGGGTCACCAACAGTCGCAGCCTCCTGCTCATGTCCAAGCACAGACTCAGGGCCAACAACAACAATTCCAAAGACTGAAGGTTGAAGATGCCTTATCGTATTTGGACCAAGTGAAACTTCAGTTTGGTAATCAACCACAAGTATACAATCATTTTCTGGATATCATGAAGGAATTCAAATCCCAGAGTATTGACACCCCTGGAGTTATTAGCAGAGTATCTACATTATTCAAGGGACACCCCGAACTAATTGTGGGCTTCAATACATTTCTGCCTCCTGGGTACAAGATAGAGGTCCACTCGCATGACACTGTGTCAGTGACAGCTCCAACAGGACAACACACCCAGATatgtacagcgggagtcacgttagaagtgACCCAACCAATTCCAAGCAGCcagcctcagccataccaacaacaaacacagaaacaacaacagcagcaGTCCCATACTCAGCAACAAAACCAGTCCAATAATTCATCTCAACAAAATCAGGCGCAACAACCCGTGGAGTTCAACCATGCAATTAATTATGTCAATAAGATAAAGAATCGGTTTCAGGGCCAGCCTGAAATCTACAAAGCATTTCTTGAAATTCTTCACACTTATCAAAAAGAACAAAAGAACATCAAAGAGGCTGCAATGCAAGGCACTCCATTGTCGGAACAAGAAATCTACATGAGAGAAGCAAAGTTGGCAAATGAGGTTTATAAACAGGTTGCCAAGCTGTTTCAAAACCAAGAAGACCTGCTGAAAGAATTCAGTCAATTCCTTCCTGATGCTAATGGCACCACACCGTCCAGTCAGTCCGTACGAACACAGGGATTAATAGCTGCATCTGGTCGCATACAAGGGCATTTAGCTGGTCAGGGACGACATGATTATGCTCCTCCACTTAAAAAACAAGCAGTAGGTATGAACTCCTCCAAAAGAATGTCCCAGATAAGAAGAAATTCCAACACTACAGGATCATCGCCACATTCTGTCTCCAAGAAGAAATCTCGTAATGTTATGAAAGAAGTGTCCTTGGCGGAAGCAGGAAAGCTGGGCACTTTTTCTGAATATGCATTTTTTGATAAAGTTCACAAGGCCCTGAAAAGTTCTGAAGTATATGATAACTTTTTGCGCTGCTTAATGCTTTTTAATGATGAGGTTATTTCAAGAGCTGAACTCGTTCAACTGGGATCCAACTTCCTGGGGAAGTTTCCAGAGCTCTTTACCTGGTTCAGGGAGTTTCTTGGTTATAAGGACTCCTCGCCGATGGAGACCATGACAGGTTACAAGGAAAGAACATCAGGGGAGCTGGCACACTTAGAGATAGATTATTCATCGTGTAAAAGATATGGCACAAGCTACAGGGCGTTACCCAAGAGTTATAACCAACCCAAATGCTCGGGAAGATCAGACCTGTGCCGAGAAGTTCTCAATGATACATGGGTGTCTTTCCCTTCCTGGTCAGAGGACACACCATTTCCAGGAACAAGAAAAACTCAATATGAGGAATATATTTATAGATGTGAGGATGAACGATTTGAACTTGATGTTGTATTAGAATCAAATGCATCTACAATCAGAACCCTGGAAGCTGTACAGAAAAAGCTATTAAGATTGACACCAGAGGAGCAACATAAATTTAGAATGGACAGCTGTCTTGGTGGGACATCGGAGGTTGTACAAAAAAAAGCTATACAAAGGATATATGGAGACAAAGCACCGGACATTATTGATGGAATGAAGAAAACACCAGCAGTAGCAGTACCCCTTGTTCTTAAAAGATTAAAAGCCAAAGAAGATGAATGGCGAGAGTCACAGCGACATTTCAATAAGATCTGGAGAGAACAAAATGAGAAGTATTACCTCAAGTCCCTTGATCACCAAGGCATTACCTTCAAACAAAACGACCTGAAGGCCATGCGATCGAAGAGCGTTGTCAACGAAATTGAGACTATATTTGATGAGAAACTAGAACAGGCTGCAGAGGGTAATGGAGATGCTTGTGGCCCCCATGTTGTGTTTACTTATCAGGATAAGTCCATATTAGATGATGCAGCAGGTCTTATAATTCATCATGTCAAGAGACAGACTAGTATCCACAAGGAAGAAAAGGCCAAGATAAAGCTTTTATTGCACTGCTTTTTGCCTGATCTTCTCTTTGCACCCAGGGGAGATCTTAGTGATGATGAAGAATCGGTGAAAGAAATGAATGGTCCTGGTAAACCAGAATTATCCAATGGACTTGAAGAGGGCGAGGCGGATGATGCATATAATTTGTTCTTTATCAATAATAATTGGTACATTTTCCTGAGATTGCACCAGATGCTGTGTGAACGTATGCAAAAGATGTATCTCCAGTCGGTGGCCATTGCTGAGGGCGAAGCGTCAGACAAACAGCAGAGGAAAGAAGCCACTGCCATTGCATTGCGGCTGAAAGCACCCAGTGAAATAGACCTAGAGGAATACTATCCAGCATTCCTGGACATGGTGAAGAATGTACTTGATGGTAACATGGATTCTACAATGTTTGAAGACACTTGTAGAGAGATGTTTGGTGTGTATGCATACATAGCATTCACAATGGATAAACTAGTACAGAACATTGTTAGACAGCTTCACACCATTGTCACTGACGAGACAGGCATCCAAATAACTGAGCAGTATCAACAAGAACAGCCCAACGGCGCAACGGGTGGCAGCTCGGCTACACAGCATTTAAGAGCTCCAGCAGAGACTGCATATCAGAATAAGGCTGAATCCGTGCTGACGGATGAAAACTGCTACAAGGCTGTCATTCACAAGGATCAGAACATTTGTAAAGTCAGTCTAGAACTGCTAGACACTGGGGATACTAACTCAGAAGACCCCTTAGAAGTGGAGAAATGGAATGATTATGTTCAGAAATACGTTGGAAGTGAAGAGGTTTCTCAAGAAGTCAAAGAACATTTACAGCAAAAGCCTTTGTTTTTACCAAGGACAATACAAAGAAGACGGAATAAGCCCCTTCGCAGTGCACAAGAGTCGACTAATGATAATGGATCATCTACTGATGAAGCTGAGAGCGAAGCCAATAAAAGTGACAAAGAGGACGAGGACGGAGAAGAAATTGAAGACATGGAGGTCGAGAACTCTATGCAGTGTAAATTGAGTCTGAATTCGTACAAAATGAGtgttgaagacgagaagatcttcaaatttgagatcgccaccccttccattgaggagcgagctgaggagctatgcgttgtagcagcaaataacgaagagaccagcaaatatatggtcgccaccctttccattcgcgagggagctgtcccagcagcaaataacgaagagaccaCAAGTACGGTCGaattgcaaaggagaaagttactgatttcaggtgacattgaagtaaacccaggcccagtttccaatgcaaataatacagtgtcaagaattcccccaatggtattattacagtctagattaaccgagcaaggttttaaaagatcattagatgttggcggtgcaggtgattgtttctttagaacagtatcacatcaattatatggtgcaaccaactatcacatggatgtacatactgctggtgttcaatacatgagaaataatccagaaaggtttattgagagtaatacagctcattcatggataacgcatatatctaatatgtctcgacaaggtacatggtgtgatgcactaatcatacaagcagttgcagatgctatgaatcttaccatccgtattacagaatcaaatgagggctttgcagcattcactgttatgcgcatgtgcgagacaattcagtag

Transcript

alvinactis_v1_g8819

Protein

Uniprot

Uniprot term	Description
Q96ST3	Paired amphipathic helix protein Sin3a OS=Homo sapiens OX=9606 GN=SIN3A PE=1 SV=2
Q60520	Paired amphipathic helix protein Sin3a OS=Mus musculus OX=10090 GN=Sin3a PE=1 SV=3
Q62141	Paired amphipathic helix protein Sin3b OS=Mus musculus OX=10090 GN=Sin3b PE=1 SV=2

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02671	PAH	Paired amphipathic helix repeat	Repeat	Interproscan
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF08295	Sin3_corepress	Sin3 family co-repressor	Domain	Interproscan
PF16879	Sin3a_C	C-terminal domain of Sin3a protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR003822	Repeat	Paired amphipathic helix	Interproscan
IPR036600	Homologous_superfamily	Paired amphipathic helix superfamily	Interproscan
IPR003323	Domain	OTU domain	Interproscan
IPR039774	Family	Transcriptional regulatory protein Sin3-like	Interproscan
IPR013194	Domain	Histone deacetylase interacting domain	Interproscan
IPR031693	Domain	Sin3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12346	SIN3B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000118	Cellular Component	histone deacetylase complex	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0016580	Cellular Component	obsolete Sin3 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11644	SIN3A; paired amphipathic helix protein Sin3a	-	Chromosome and associated proteins	ko03036	deepkoala