Gene detail

Detailed information of alvinactis_v1_g9397 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:24255194...24273006
NR annotation: XP_031571108.1, echinoderm microtubule-associated protein-like 2 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g9397

ATGAATATAGAGGGATATGACGTCAAGATTATTGGAGGAAAAATTAGAAAAATTCCCATTTACAGAAAAGATGGATCAGCAACACAATCTAACTGCAAAATTGGCAGTAAATACTCAATAATTCCACCTATTTCAGATCACAAACCAGACAAGTTGTCTTTTGACATTCTTGCCCAGCGTGTCTCAGAAGCACTTGTTAACGTTAGCAAGGCAAAACTGGATAATGTACGGTTAACATTTCAGCGATTAGATACTGATAAATCTGGCTTGATAACTACCAAAGAACTCAATGATGTATTTCTGATGTACAATATATTTATACTTGGCTCTACATTGATGCAGTCTCTTATAAAGAGGTTTGAACGAAACGGTGGCGGGGTCTACCATGAAAAGCTGTGGAATTTCTTAGCAGAATGCTATACAGCTAGACATCCAGATAAAACCAAATTGAATGGCCACGTTGCACAGCCAAGACTGATAAACCGTCATGATGCAACAATGGATGAGATCAGAGCAATTGAGATTGAATTGGAAAGACAGTTAGCCAGTACACGACAACCAAACTTAAAGGAGCTCAAACGCGCCTGCAAGAACAGAGCCAATGTGCAAGATGGAAGCATTTTATTTAGTGAGATGAGAGAACTCTGCCTGCACCACGAGCTATGTTTAAGTAGATCCCTTCTAGAGAGGCTACTCAACCACTTTGATTCAAATAGAGATGGTTCAATCAATTGGAGCAATTTTCTGGAATTGATTGAAAAATCTATGTCCAAAGATGTTGGTTCAGGCCATGCTGCAATCACCATTGACAGCAAACATCAGTATAAACAGCCTGTCAAGAAACACAAATCAAGTGTACAGACGCAAACAAAAAATGGTCGGTGTTATAACACACTCGTAACAACAAGCAATGGTCATAATAACAGAGCCGTTGAAAGGCCTAAATCAGGTCCAGATCCAGTATATGTACGTGTGAGTGGACGAAAGGTCTATGTATACCCCCCTGATGAGCATATTGATACGGCTGTATCCTCAGAACCACCTGATGCAAAGCTAGTCTTAGAATGGGTATATGGATATCGTGGACGAGACTGTCGTAAGAATTTGTCTGTACTCCAGTCTGGTGAGCTTGTCTACTTTATAGCAGCTGTGGTGGTCATCTTTGACAAAAAGGCAAACAAACAAAGACATTATACAGAACACACAGATGATATCAAGAGCATGACTGTTCATCCAGATGGAGTCACCATGGCAACAGGACAGGTTGCAGGTCACAATAAAGTACAAGGAGAGCCTCACGTTCGTATTTGGAGCTCAGAGTCTCTTCAAACTAAGATGGTAATTGGGCTTGGTTACTTTGAACGGGCTGTTATTTCGCTAGCGTTCTCTTTTCAGCCTGGCATAGATAAAGGACGATACTTGGTTAACGTGGATGACAACGACTATCATACCATTACCGTGTGGGACTGGGACAAAAATAAGAAAATTGCCAacgcaaggGGCCACATGGATCAAGTACTCGTCGCTGAATTTTCTCCTTTTAACAACAGACAGATTGTATCATGTGGAAAGCATCACGTCAGCTTCTGGACCTTGAACGACGACAACAAGTTAAAATGTGATCGAGGAAGATTTGACCATAATGTCAAACCCAAGTACATCACGTGCTTCACATTCTCAAAAGATGGCGACGTTATTACTGGAGATACAAATGGGACCATCTTTGTCTGGCCAGAAGATAATAATCAAATTTCAAATTCAGTAAAGAATGCTCATGATGGCTCAGTCTATTCGCTGTTGGTCTTGTCGAGTGGTGTTCTTCTGTCAGCTGGTGGCAGAGATGGAGTTGTTAGAGCCTGGGACCGTAGACTTCAACCAATGGGTGTTCAACTTAAGTTTCCAGCAAATGTGACAGGTATTCGTACACTTGCCGTTGATGCACTCAATAACCTCTACGTTGGCACTGTTAATAATAGTATCTGGTGTACGGACCTAGCAGTGGGGAAGTCACCACTACTGGACGTGGGTATCAGGCTAAGGCCAATATTAGAGGGACACACGGATGAACTTCGAGGCCTGGCTACTCATCCCACTTCGCCCAAGTTCATTACGGCTGGTGGTGACAAGACACTTAAACTGTGGAACGCAGACGAGAAGAGTGTTGCGTGGTCTGCAAGACTTCCGGCTGCAGCTCAAGCAGCAGATTTCAGTCCAAAAGAAGACGTGGTTGCTATTGGTCACAAAGATGGAAGCTTCACCATAATACAGTCGTCGTCAGGAAATGTCGTGGTTCACAAAAAGTGCTCAAGGGAAAAAATATCAGAACTAAAGTTTTCTCCAGATGGTGTTTACCTTGCATTGGCATCACATGACAACTATATCTACGTCTTTAAGCTGCAGCTAAATGGAGTTGGACAGAGTATCGAACTGCAGGGCAAATGTAGTGGCCACACCAGTTATGTTACCCATCTTGACTGGTCAGCGGACAGTACTCAAATACAAAGCACATCCGGGGATTACGAGTTATTGTTCTGGGATGTTTTAATATGTGAACGTATTACGTCAGCAGAGGAGATGCGCAATACCGACTGGGCAAGCCATAATTGTGTTCTCGGGTACCCTGTGCTAGGTATTTGGCCGGACGAGTCTGATGGAACAGACATTAATGCTGTAGACAGGTCACACTCGAAACGTCTCCTTGCAACAGCAGACGATTTTGGAAATGTCAATATGTTCCGATACCCTTGTGCTAACTTGAAGGCCAAACCCCACGTAGCCAAGGGACATAGTGCCCACGTGACCTGTGTTCGCTTTCTCTATGACGACTCTCGGCTCGTTTCAGTCGGTGGGCGTGACGCGAGTGTCATGCAATGGAAGATAACAACGTGA

Transcript

alvinactis_v1_g9397

Protein

Uniprot

Uniprot term	Description
Q9Y1C1	77 kDa echinoderm microtubule-associated protein (Fragment) OS=Lytechinus variegatus OX=7654 GN=EMAP PE=2 SV=1
Q7TNG5	Echinoderm microtubule-associated protein-like 2 OS=Mus musculus OX=10090 GN=Eml2 PE=1 SV=1
Q6P6T4	Echinoderm microtubule-associated protein-like 2 OS=Rattus norvegicus OX=10116 GN=Eml2 PE=1 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF20742	DUF5580_M	Family of unknown function (DUF5580) middle domain	Domain	Interproscan
PF03451	HELP	HELP motif	Repeat	Interproscan
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR049246	Domain	DUF5580, middle domain	Interproscan
IPR005108	Conserved_site	HELP motif	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR050630	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0072686	Cellular Component	mitotic spindle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18595	EML1_2; echinoderm microtubule-associated protein-like 1/2	-	Cytoskeleton proteins	ko04812	deepkoala