Gene detail

Detailed information of alvinactis_v1_g9497 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:25570246...25581708
NR annotation: KXJ15083.1, THO complex subunit 6-like [Exaiptasia diaphana]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q5XJS5	THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1
Q6AY87	THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1
Q5U4D9	THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1

Gene family

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12928	tRNA_int_end_N2	tRNA-splicing endonuclease subunit sen54 N-term	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR024336	Domain	tRNA-splicing endonuclease, subunit Sen54, N-terminal	Interproscan
IPR042626	Family	THO complex subunit 6	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036740	Homologous_superfamily	tRNA intron endonuclease, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44411	THO COMPLEX SUBUNIT 6 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000346	Cellular Component	transcription export complex	Interproscan
GO:0000347	Cellular Component	THO complex	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0000213	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0006388	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13175	THOC6; THO complex subunit 6	-	Spliceosome	ko03041	deepkoala