Detailed information of alvinactis_v1_g9632 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:27275364...27303386
NR annotation: XP_028515450.1, nucleosome-remodeling factor subunit BPTF [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q12830Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens OX=9606 GN=BPTF PE=1 SV=3
Q9W0T1Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster OX=7227 GN=E(bx) PE=1 SV=2
Q6BER5Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis elegans OX=6239 GN=nurf-1 PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01822WSCWSC domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00439BromodomainBromodomainDomainInterproscan
PF02791DDTDDT domainFamilyInterproscan
PF15613WSDWilliams-Beuren syndrome DDT (WSD), D-TOX E motifFamilyInterproscan
PF00628PHDPHD-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001487DomainBromodomainInterproscan
IPR002889DomainCarbohydrate-binding WSCInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR038028FamilyNucleosome-remodeling factor subunit BPTFInterproscan
IPR036427Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR018359Conserved_siteBromodomain, conserved siteInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR018501DomainDDT domainInterproscan
IPR028941DomainWHIM2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45975NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTFInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016589Cellular ComponentNURF complexInterproscan
GO:0035064Molecular Functionmethylated histone bindingInterproscan

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