Detailed information of alvinactis_v1_g9760 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_4:29002846...29042540
NR annotation: XP_020898861.1, uncharacterized protein LOC110237600 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q54NA6Myb-like protein L OS=Dictyostelium discoideum OX=44689 GN=mybL PE=3 SV=1
Q9NP66High mobility group protein 20A OS=Homo sapiens OX=9606 GN=HMG20A PE=1 SV=1
Q9DC33High mobility group protein 20A OS=Mus musculus OX=10090 GN=Hmg20a PE=1 SV=1
 Gene family
Gene familySubfamily
Transcription Factors FamilyMYB
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF12874zf-metZinc-finger of C2H2 typeDomainInterproscan
PF13921Myb_DNA-bind_6Myb-like DNA-binding domainDomainInterproscan
PF00249Myb_DNA-bindingMyb-like DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001005DomainSANT/Myb domainInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR017930DomainMyb domainInterproscan
IPR003604DomainMatrin/U1-C-like, C2H2-type zinc fingerInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR017884DomainSANT domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR051575FamilyMyb-like DNA-bindingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46621SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0001006Molecular FunctionRNA polymerase III type 3 promoter sequence-specific DNA bindingInterproscan
GO:0019185Cellular ComponentsnRNA-activating protein complexInterproscan
GO:0042795Biological ProcesssnRNA transcription by RNA polymerase IIInterproscan
GO:0042796Biological ProcesssnRNA transcription by RNA polymerase IIIInterproscan

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