Gene detail

Detailed information of ctg1069-5.34-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg1069-5.34-1	PRE-MRNA SPLICING FACTOR	chr7	42981947	43030956	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg1069-5.34-1

ATGGGCTCGCCGCCGGGGATCGATCCCACACCGACCGCGCATCGAGCGAGCGCCGAAGCAACTGGCTTTACTACAAGATCTGACATAGGTCCTGCAAGAGAAATAGATGACATCTCTGAGGACCGCCATCCTGTTCCGATAAAGAAGCCAAAGAACCAGGATGATGATGATGACGAAGATCTTAACGACGCCAACTTTGATGAATTTGCAGGTTACGGCGGCAGCTTGTGCAACAAAGATCCCTATGACAAAGATGACGAGGAGGCCGACGCAATCTACGAGGCGATCGACAAAAGAATGGACGAGAAACGGAGAGAGAGAAGAGAGGAGAAGCTGAGGCAGGAATTGGAGAAGTTTCGACAAGAACGACCAAAGATTCAGCAACAGTTCTCCGATCTCAAGCGAGATCTGGCTGATGTTACTGTGGACTCATGGAATAATTTACCGGAAGTCGGTGATGCTAGAAATCGCAAACAGCGCAACCCTCGTACAGAAAAAATGAACGCACGACACTCCGTTAACGCTGTTCAAAACCGGAAGTACAAACATACCTGTAGATTCACACCGGTCCCAGACAGTATCCTGGCCAAGGCCGCGGCATCGACGGGCATGAATACAACACTGAGTGATAAAGATCAGCGTTTCGATGGTCTCGTGACTCCCGGGTTTTCCACGCCACAGGCCGACATAGACATGAAGAAAATCGGCCAGGCCAGAAACACGCTGATGGATATCAAATTGACACAGGTTTCTGATTCAGTCAGTGGACAGACGGTCGTCGATCCCAAGGGATACCTCACCGACCTGCAGTCCATGCTCCCGTCCCACGGAGGAGATATCAATGATGTGAAGAAGGCACGCCTGCTCCTCAAGTCTGTGCGTGAGACGAACCCAAAACACCCCCCTGCGTGGATTGCGTCGGCACGTCTCGAGGAGGTGACGGGGAAGATCCAGGCTGCGCGGAACCTCATCATGAAGGGCTGCGAGGAATGTCCCAACAGTGAGGACGTGTGGCTGGAGGCGGCCAGACTCATGCCAGGGGATCAGGCCAAGGCGATTGTGGCTCAAGCGGTGCGGCACTTACCAAACTCCGTCAGGATCTGGATCAAAGCGGCCGACGTGGAACCGGAGCTTAAAGGAAAGAAGAGAGTCTACAGAAAAGCTCTGGAGCACATCCCGAACTCAGTGAAGCTGTGGAAGATGGCTGTCGAACTGGAGAATGAGGAGGATGCGAGGATCATGTTGAGTCGTGCCGTCGAGTGCTGCTCAACCAGTGTCGAGGTAAAATATCCCTTGATGCTAATCGAAAAAAACTGTGGCTGGCTCTTGGCAAGGTTAGAAAATTACGAGAATGCCCGGAAGGTGTTGAACAAGGCTCGAGAAAACATTCCGACGGATCGACAGATCTGGGTGTCGGCTGCCAAGCTGGAGGAAGCCAACGGGAACACGCATATGGTGGATAAAATTATTGACAGAGCACTGACGTCTCTGCGCGCCAACATGGTAGAGATAAACCGTGAACACTGGCTGAAGGATGCAGAGGACTGTGAGAAGAGTAGCAGCATTCACACCTGTCAGGCCATCGTTCGAGCTGTGGTCAGTGTTGGTATAGAGGAAGAAGACTGGAAACACACGTGGATGGAGGACGCCGACGCGTGTGCGGCACACAGTGCGTACGAGTGCGCGCGAGCGATCTACGCCCATGCGTTGACTGTGTTCCCCAGTAAGAAGAGTATCTGGCTGAGAGCGGCCTACTTTGAGAAGAACTACGGAAGCAGAGAATCGCTGGAAGCACTTTTACAACGAGCGGTTGCCCACTGTCCTAAAGCGGAAGTTCTCTGGTTGATGGGGGCCAAGTCAAAATGGCTGGCAGATGATGTTCCGGCTGCTCGAAGTATCCTAGCACTGGCGTTTCAGGCTAACCCGAACAGCGAGGAGATCTGGCTCGCTGCTGTCAAGCTGGAGAGTGAGAACAACGAGTTTGAGAGAGCTCGCAGACTCCTACAGAAAGCCAGGGCCAGCGCCCCCACAGCCAGGCTTGCGATGATGAAAGGTCAGATTGAGGAACAGATGGGTCAGCTAGAGATGGCCAGGCAAGCGTATAATCATGGGCTGAAGAAGTGTCCGAATTCCATTCCTCTCTGGCTGTTGTTGTCTCGCCTGGAAGAGAAAGTTGGTCAGCTCACCAAAGCTCGGTCGATTCTCGAGAAATCTCGCCTCAAAAACCCTCACTGTCCAGATCTTTGGTTGGAAGCCGTCCGAGTGGAAAACAGATGTGGACTGAAAAACATTGCCCACACGCTGATGGCAAAAGCCCTGCAGGAGTGTCCTAACTCAGGGATCTTATGGGCGGAGGCTATTTTCATGGAGCCGCGGCCGCAGAGAAAAACGAAATCGGTCGACGCGCTTCGCAAGTGTGAGCACGATCCACACGTGTTGTTAGCTGCATCCAAGCTGTTTTGGACAGAGCGTAAGATCAGCAAGGCGCGGGACTGGTTTAACCGGACCGTGAAGATCGACCCAGATCTCGGCGACGCCTGGGCCTTCTTCTACAGGTTCGAGCTCATGCACGGGGATGAGCAATCACAGAAGCTCGTTGCCAAGAAATGTGTCCAGTCAGAACCTCATCATGGAGAGTTCTGGTGTAATGTGTCGAAAAACATTGAAAACTGGAGACTGAGGACGGAAGAGTTGCTCCCACTTGTAGCACGATCACTTCCCCTTCCAACATGAGATCTTTAAAGAAGATCTCTAAAAAAAAAAAAAAAAAAAAAACACATAAATATTGGGGACTGAATCCTGATGGATCAGTGATGATGTAAACTTCATTCTGATTGGATAACTCATTTTATCCTTTCAACTATCCTTTCCTTTTGACTGGATAACTTGTGTTATCATTGGCATCTTTTTGGCTTACTGAAGATTTGAAAATCTTAGATGGTCACCGATTGGATAACTTGTGTTATCACCTGCATCTTATAGACTTACTGTAGATTTGAAAATCTTAGACAATCACTGATTGAAGAAAGGGTTCAGTGTTATCTGTATTTTACTGGCTTACTGAAGATTTGACAATGTTACATGGTCCCTGGTCTTGGTTAGTTGTATCTCGATTGGATGCCTTTTGTGAACACCATTTTGATTGGATCTCTTTATCATGTATGTCAATCCAAGGCCATAGTATGTACTATTCTGTCTGTGGTAATGATGCATTATAAAAGATGCCTTGCTACTAATGGAAACATGTAGCGGGTTTTCTATCTAAGACTATATATCGAAATTACCAAATGTCTGACATCCAATAGCCGATGATTAATAAATCAATGTGCTCTAGTGGTGTTGTTAAACAAAACAAAACTTTATCAGGTATGTAAAGTACATTTTCATTGAAAAACTCATCTCGTGAACTTCGTGTCGATTGGGTCGCCATGGTTTTGAACTTGAATTACAAACTGGGTGGATGCCAGTTTTTTGTTATTTTCCAGTATAAATTGTCAAAGAATAACACCTTCAGTAAAATTACATTTTCATAGTTTACAAGAATTTGATTGTGAGTTTCAGTATGCTCATTCACAGAGACTTAAATCCACTGAACATTCAAACGCAGCTCTTCTGGACGCACTGCCATAGTTTTCTGTCCTTGTGGTAAATGTGGGGTGGGGTGGGGTTGGGGGTGGGGCAGGCGTTCTGCCAGAAGATGATGGGTATGAACAACTATTTGGTATTACTAGTAGCAGGATTCCCCTCTTACTCGCTGTCAGCCAAATGAAATAACCTATTTTAGACACTGAATAATCATTGTTTAAAATGAGCTAAAGTCTTGTGAAATAAATATTTCTTCCCTTAAGCTGTAAATCCTAACCGGATGCAAGTGACGCGAGAAATTATTTTAGAAATCATTGGTTTCAATCGCAGTATCCTAACCGCATGCGTAAGGCGCGACAGATAATTATGTAGCAGTGTACGCATGCAGTTACGAATGCAGCAATTGAAATCGGTGATTTCTAAAATAAAACGCTCGCGTCTGGTTAGGATACAACTTTATTATAATTGAAGATTAGCATATCCGGTCTGCTCCTCTACACCCCTACCCCCAACAGTCTAGGATTTTCTTCAGCTTGTAATTTCAATGGTAAAACCTATTTTTTCAGGGACACATCACTGCACCATCCACCCCCGCCCCCAGGTTTCTTAAACCTGTCTGGCATTTGTAATTTAAAACCTGTTTCCTAGGTATGTAGGTAGGTAAGTAACTAGTTTAACGTGCTCATATACCACTAGGGTTTCGAATACGCCATATACCACTAGGGTTTCGAACACGCCCTATACCACTAGGGTTTCGAACACGCCCATCACGAGTCCGATATGATCAGGGGCCTGACTCGGGACAGGACGTAATTACTTAACAGATAATTTTGAAATTTTTATTCAAGTCCTAATAATAAATGGGAGAAAAGGGGTAATTAATTTTTAGATGCGCCAAAAAAAAAAAAATTATATATTATAATTAAAAAATATACCTAACAACTTCAACATAAGTGGCGCAAAATTTTAATGGGTTAGTCTAAAATAAATTTTATTTATAAATTTCAGACTTGCCATTTGTGACACCCAATAGCCGATGTGCATTTTTGTACTGGGGTGTGGTTAAACATTCATTCATTCATTATAAATTTTATGGACAGCTGATAACCTTAATTAAATTTAGGTCCAAGGAGGTTAAGAAGAAAGGTTGTACTAAATGTACCTAATAACTGGTGTATATCAGCGATATGTGAAGTGTGATGTATACCTTGTTATACATTTTGAAAAATAAATGTCTTGCACTGTAATATGACTTTATTGTTACTTATCAGAGAAGCATTTACTTGACAAATTAATCATTTTAAAGTAACCAGAATGTTATTTTCATTTGTAATGTGGGTAGACGAGATCAAACCCGTTTATAGGCGTCAAGTGGTCTACATGTACGTACGTGTATTTGTATTTTGTGTGGCCTTGCT

Transcript

ctg1069-5.34-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06424	PRP1_N	PRP1 splicing factor, N-terminal	Domain	Interproscan
PF09976	TPR_21	Tetratricopeptide repeat-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR010491	Domain	PRP1 splicing factor, N-terminal	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR018704	Domain	Tetratricopeptide repeat-like domain	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR045075	Family	Pre-mRNA-splicing factor Syf1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11246	PRE-MRNA SPLICING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000244	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0046540	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg1069-5.34-1 global RNA-seq network