Gene detail

Detailed information of ctg247-5.34-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg247-5.34-1	WD-40 REPEAT PROTEIN	chr5	26179580	26230460	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg247-5.34-1

GGGGGGGGGGGGGGTGTTTGTTGATACTGTTGATGTTATTGACATATTATTGTTGATTTAAACGTGTTTGTGTGTGTGTGGGTTTTTTTTGTGTGGGTTTATTTTTTTGCTATTGACTTTATGCATATTGTTGATTTAGTATTGTTGATTTATGTTAATTTGAATATTTATGTTTATATTATTAATTGTTTGTTTTCATTTCTGTTAATGTTGTTGCTGTTGTTCTTAAAGTTATCTTTATTATTGTCGTTTGTTTGTTGTTGTTGTTATTATTGTTGTTGGTGGTGGTGGTGGTTTTGTTATTGTTGTTATTATTATTTTTTATTATTATTATTTTTATTATTATTAATATTATAGTTGTTTATATTATTATTGTTTTTGTTTTTTGTTTGTATTGATATTGTTTTTGTCATCATCATCATCATCATCATCATCATCATCACCATCATTAGCATCTTCATTATTTTGGATGTATTTACTGGTCTTGGATTATATTTTACTGTTGTTGTGTTTGTTGTTTATTATATTTCACATCTCAGACATCCTGCCATCCGAACACGTGGATCCTAAGGAGAAACTGGAGAAAGCTTTGAAGGACGCTCTAGAGCAGTACTCCAGACAGAGACTGAGGGCAGTGCACATGAGCCTACGTCGCTATGGCAACGTGGAAGCCAGGATATCCCAGAAGGACCTGCTGCAAGCGCTCCAGGAAAACGAAGTAAACCTGTCTAATCGACTTTTTCAAATGATCTTGGAGATTTTTGAAGATCACGTTGGCGTGGATTATGAAGACATGTATAAATGTCTGACGGCAGCTCACGACAAAACAAACCGTGACAGCGTGAAAGCACGACGTCTTCGTAACGACCTGTCCGCCCACGCCGACGTCTCTCTGGAGAAACAGGACGCAGAGTTCCTCCGACGAATAGAGGAGATGCTTATCAAGAACAAGGTCTTCTTCGACATAGACGCGCTGAGGAAAGACTTCCAGTCGTGGGATTCCACCAGGACAGGGAAGATAGCTAAAGAAAGTATTTTGATGGTATGCAATGACCGGACACCACTCTATGGCGCCTTGCTGAAGAACCTGGTCAAGCGGTGTGATGTGGAGAAAAACGGTCAAGTGAGCTGGCCAGAATTTATTAATTTTCTGGACAAAGGACAGCAGCGAGCCTGGCTGAAGTTTCCGGAACTGTCGAAACTTCCCGAAAAGGCGAAACAAGAATCGAAGTTCACCATGAACCAGAACCCGATCGAGGAGCTGTCTACGAACGCCAGGTCCCGAGTGGTGTCGAAGCTTCTACGAAGGAGGGAAAAGTCGACTCTCTCCAACTCTGATAAAATTACAAGTAAAGAGAAGTCAGACTTGAAAAAAGAAAAAGCCAATGTGTCTGCAGAAAATTCGTCGAAGGAGAATGCAGAAGGCGACAGTTCTGCGAAAACAAGTATGAAGCGATTTGGCAGGCTTGTTTCGTCATCAACAGGTTTTCTGAACCATGTCAAGTCGATGGTGGCAGGTAAAAAGAAACTAGTCGAGACAGAACAGGTTCCAATTATCGAGGTTGAAAATCCCAGTGAAGCTAGTGGCGATAGTGAGGTCAAGGTCGACACAGACAAACCGAAAGTAAATGTCAGCCCCGCAGCGAATGGTGTGTCCGGTTCCGGTGACGTCTCTACCGGATCGTCTGCTGAGACAACAAGCGGGAAGGAGAAGAAGAAACCGGCGGAAGTTAATAAATCTAGTTCTGAAAATAAACGAAACGACAAAGATAAATCAAAAGAATCCAAAAATGCGTCATCAGAAAATACGTCAAAGAGCAATGACAAGAAAGAGGAACTTAAAGAGACGAAGTCAACAACGGAGAAAAAACAGGAAAAGACAAATAACAAAGTGAAAGAAGAAAAACCGGAAGTTGAATCGGATCCAGAACCAGAGCTGACGAGTCCGAATGACGTCATCGTGAATATTCATGAGAAGAATGTCCGAGTCTTCCGCCCGAGTTCATACAAAGATAACAACTTGCCGATCGATCCACCGCGAGAGAGGCTACAACTTGATTGGATATACGGCTATCGAGGCCACGACTGTCGGATGAACATCCACGTCCTGGCCAATCAGGAGATCGCTTACTTCCTGGCCAACACCGTCATCCTGTACAACCTGGAGGCTCACACACAGCGGCACTACAGGGAACACACGGAGGACATCAAATGTATGGCTGTTCATACAAATGGAAATATCATCGCCACAGGACAGTGTGCAAGCAAAAGTTCATTGCAGCAAAATACCGCCAACGTGAGGATATGGCGAGCCGACACACTACAGACGATGTACACCCTGGGATCTGGCATGTTTACGAAAGCTGTGATGTCAGTAGCCTTCCCCAAAGACACTGACTTGGTGGCTGCGGTTGATCTAAGTCAGGACAAACAGCTGACTGTCTGGGATGTGACTGACGGAAAACTTGTCGCAAATACTTTCATAAACATAGACGTAGTGTGTGCTATCGGCTTCAACCCGGCGGACCCGAACCTGCTGGTGACGGTGGGGAAGGAACACATCGGGTGGTGGAAAGTTTACGCTGAAACTCACACCATCCAAAAGTTCGCGAATCCTGATTACGAGAACTATTTACGAGCTCGGTTTGTCATTTGCCTGACCCACAACGAGAAGGGGGATCTAATCACTGGAGACTCGAACGGAACTATTTACATCTGGGGAGGGGGCGGCCACAAGATCACCAACTTTGTTAAACATAGCCATGAGTGTCCAATCTTCACGGTTCTGTATTACCGCCATCACGTGTTATCTGGAGGTCGTGACGGGACTCTACAGTGCTGGCAGTGGAACAAGAACATGGATAACGCAGGATCGATGGAGCTTCCGAAATCCGAGGGCGGAGTGCGCATGCTCCACGTTTATAAGGAATCTCTGCTGATTGGAACAACCATGAACTCCATTTTGTCGGTGACTCTCGCGGAGAAAGGGTCGCCGCTAGAGGACGTTGAACTTCACCCACAGCCCATTACACAGGGACATTTCGATGATGTTCGAGGTCTTCAGAAAATACCCAAGTCGTTTATTGGAGCTGATTTCCTCACAGCCGGTGTGGATGGAGTCATCAGTAAATTTAGCACAGAGAACCACCAGCCAGTGTGGAAGATCGTCATGAAGGACACTACGTTCTTGTGTGTTGACTGCAGTACAGAAGGAAAACTTCTCGCTTTTGGTACACATGACGGACATTTAATTCTGTTGGAACTGAATCCAGATGACTTGAGTGTGACGGAAGCGTTTAATATGAAGTTAACTAAAGAACGTCTAGACACCGTCAAACTGTCACCAGATTGTCTGTCGGTGGCTATCGGCGGACACGACAAGGCTATTTATATTTTCTCGCTGGTGGAACGAGAGGACGTTGGGAAAGTCTGGGAGATGCAAGGGAAGTGCAAGGGTCATCGTGGAGCTGTGACTGCCATGGACTGGTCCGCAGAAAGACTCAATGGAGATTACTATATCAGGTCAAGTTCCTCATCATGTGACCAGAGATTCTGTGGCAGTGAACACAGTTTGGGTGACGAGGTGACGCCTTTACCATTTTGGCAGCCCAAAGTTGAACACGAATCTCCGACATCTTTGCTACATTCTTCATGCCATAGCATGTGGATATGA

Transcript

ctg247-5.34-1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF03451	HELP	HELP motif	Repeat	Interproscan
PF20742	DUF5580_M	Family of unknown function (DUF5580) middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR005108	Conserved_site	HELP motif	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR049246	Domain	DUF5580, middle domain	Interproscan
IPR050630	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0072686	Cellular Component	mitotic spindle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg247-5.34-1 global RNA-seq network