Detailed information of gene01652.t1 in Actinoscyphia liui

Genomic Location: chr1:26265236...26274087
NR annotation: XP_020896637.1, hepatocyte nuclear factor 4-gamma isoform X1 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q91766Hepatocyte nuclear factor 4-alpha OS=Xenopus laevis OX=8355 GN=hnf4a PE=2 SV=2
P49698Hepatocyte nuclear factor 4-alpha OS=Mus musculus OX=10090 GN=Hnf4a PE=1 SV=2
P22449Hepatocyte nuclear factor 4-alpha OS=Rattus norvegicus OX=10116 GN=Hnf4a PE=1 SV=3
 Gene family
Gene familySubfamily
Transcription Factors FamilyESR-like
Transcription Factors FamilyMiscellaneous
Transcription Factors FamilyNGFIB-like
Transcription Factors FamilyRXR-like
Transcription Factors FamilySF-like
Transcription Factors FamilyTHR-like
Transcription Factors FamilyGCNF-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00104Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan
PF00105zf-C4Zinc finger, C4 type (two domains)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049635DomainHepatocyte nuclear factor 4, ligand-binding domainInterproscan
IPR000536DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR001628DomainZinc finger, nuclear hormone receptor-typeInterproscan
IPR049636DomainHepatocyte nuclear factor 4-like, DNA-binding domainInterproscan
IPR050274FamilyNuclear hormone receptor family NR2 subfamilyInterproscan
IPR035500Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan
IPR000003FamilyRetinoid X receptor/HNF4Interproscan
IPR001723FamilyNuclear hormone receptorInterproscan
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24083NUCLEAR HORMONE RECEPTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0004879Molecular Functionnuclear receptor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0048856Biological Processanatomical structure developmentInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003707Molecular Functionnuclear steroid receptor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K07292NR2A1, HNF4A; hepatocyte nuclear factor 4-alpha-Nuclear receptorsko03310deepkoala

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