Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
Genomic Location: chr1:31196346...31200168
NR annotation: XP_020897833.1, pre-mRNA-splicing factor cwf2 [Exaiptasia diaphana]
| CDS | |
| gene01976.t1 | |
| Transcript |
| gene01976.t1 |
| Protein |
| gene01976.t1 |
| Uniprot term | Description |
|---|---|
| Q6T412 | Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans OX=5022 GN=CWC2 PE=3 SV=1 |
| Q51TF7 | Pre-mRNA-splicing factor CWC2 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=CWC2 PE=3 SV=2 |
| Q5BB35 | Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cwc2 PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF16131 | Torus | Torus domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001202 | Domain | WW domain | Interproscan |
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR000571 | Domain | Zinc finger, CCCH-type | Interproscan |
| IPR034181 | Domain | Pre-mRNA-splicing factor Cwc2, RNA recognition motif | Interproscan |
| IPR032297 | Domain | Torus domain | Interproscan |
| IPR039171 | Family | Pre-mRNA-splicing factor Cwc2/Slt11 | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14089 | PRE-MRNA-SPLICING FACTOR RBM22 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0046872 | Molecular Function | metal ion binding | Interproscan |
| GO:0000974 | Cellular Component | Prp19 complex | Interproscan |
| GO:0017070 | Molecular Function | U6 snRNA binding | Interproscan |
| GO:0036002 | Molecular Function | pre-mRNA binding | Interproscan |
| GO:0071006 | Cellular Component | U2-type catalytic step 1 spliceosome | Interproscan |
| GO:0071007 | Cellular Component | U2-type catalytic step 2 spliceosome | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K27398 | CWC2; pre-mRNA-splicing factor CWC2 | - | Spliceosome | ko03041 | deepkoala |