Gene detail

Detailed information of gene02698.t1 in Actinoscyphia liui

Genomic Location: chr1:40876438...40882083
NR annotation: XP_020899831.1, DDB1- and CUL4-associated factor 12 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene02698.t1

ATGTCGGTGTTTGAGTACCTGACAAAACGCCAGCAATTCGATGCCATGCTGACACGAAGAACTATAAGCGATATAACTACTCAACAGCTTCCTCATTTATTTAAACCTTCCAAAATTTCCCTTGGACAAACAGACAAGGTGTTTGCATCGAAATGGCTGGACGAGAGAAGGGTAATATGTGGTACAAAATGCAATAAGTTACTGGTTCTAGATGTTTTTACTAAAGAAAAAGTGCTCATTCCAATGCTGGAGAGCAGTCATTCAGTAATGCCACAGGCTTCAGCTGGAGTACACGACATACAAATCAACCAGAATAGATCATTACTTGCTACTAATGGTGATAACCCAAATCATCTTGCAGTGTATAGATTGCCTACACTAGATCCTGTGCTAGTTGGTGAGTCTCACAGTAACTGGATTTTTGGAGTTGAATGGATCACAGATAGAATATTAGCAACAGGTGCAAGAGATGGTACTATTTCCATTTGGAATACTGATGATGTTGAAACATCTAGGGATTTTCTAAAGTTTGCAACCGGTAGAGGTAGTGAGAAAATCAGGCCTCCTTCAATATCGCCAGCAGCGACCATGATAAGTCCATTAGATGAAGACAAAATAAGAGACTTGGCTTATAACGACAACACAGAGCATCTCGCGGCATTGTCACCCAATGCGTTTATGTATGTATGGGACATAGCAACTGAAAAGAGGTTGTCAACCATCCACTTGCCTTTTGAGTATGAGAATGTCTGCTTGGCAATGCACAAGGAGAAGGGACTATATGCTGTGGGGTCTCAATCAGATGTCTCATTTTTGGACATACGGACTGACAAGAATATATTTAATATCAGGACTCGTGACGTGGGGGCAGGTGTGCGTTCTGTTAGTTTCAAGGATTCGCTGGTTACCATAGGAACGGGACATGGATCTGTGTTCTTCTACGATCTCAGTAACAATAAGTACCTTTTCAACAAGTCTGGCCAAATTCACTCCTTAAGATCTGGAAAGGGATGGCTGCGCTTGGATAGCACTGTGTACGAGTTTTTTACCGAGCAAGACGTGGACTGTTTCAAAAATGCCATCTACTCTCACTGTTACGACCCAACGGGGACGAAGCTTTTTACGGCTGGAGGACCGCTTGCCCTTGTGTTATATGGAAACTACGTTGCACTGTGGGAATAACGAGGCGGTGCCGTTGTGTTATATGGAAACTACGTTGCACTGTGGGAATAACGAGGCGGTGCCCTTGTGTTATATGGAAACTACGTTGCACTGTGGGAATAACGAGGCGGTGCCCTTGTGTTATATGGAAACTACGTTGCACTGTGGGAATAATGAGGCGGTGCCCTTGTGTTATATGGAAACTACGTTGCACTGTGGGAATAACGAGGCGGTGCCTTCAAGGCCAAGTCTAACAATCGAGGAGAATGTACACAGATTCCAGAAAATGAAAGGATGGAAACTACGATGCCCCCTGTATCATCAGGTGGGCAAGGCTCCGTTCCTCATTGTAACTGCAATACCAATTTCCAAGAAGAAGAATGTAACGTTAGGGTTTGAGCGCATCAGAGGATCGCGTCATCGTGTTCGTCCTGTTACACTCGGTAGCTGGCAGATCAACTTCGAAGAACAGTATGTCGGTGTCTATGGTGTGTGGGGTATGATTGGATGAAGCAGAATTAATGGTGATTTAATAAGTGGCCGCCTAAGAGAGGAGGGGTCGCTCATGGAGTTTTCTAGGTTCAAACACGTATTTAGACTGTCTAGTCGTTCTTTATCACTAGACCTCTTGCAGTAATTATCAGTAATTGATTCCCTTTGCAGTTCAAGTTTGAGGACAAAACAATAGTTCTTCCCTCTCCTGAAAATTTAAAACTTTTAACTTGTAAATTCTTTTTGTTTTTGTTTTCCTCGAAATTGAAACAGAAAGGGAATTGACTGCAATGGGTGTATTCTGGTGTAGCTTGCAAATGTAGAGAAGCGAAAAAGAGTAACTTATACAATCAGTGTAATACGGATGCAAAAGACAGTATTTAAAATTATAAACTATAAAATTACAACTGGTTGATGTACAAAAATGTTGAATTAGAAAATACAAGAAATGTTATTTGTGATCTTGTTGTCATTGTTTTGAAGAAATGGTTGATTAACTGAAAATAAA

Protein

Uniprot

Uniprot term	Description
Q3MHH0	DDB1- and CUL4-associated factor 12 OS=Bos taurus OX=9913 GN=DCAF12 PE=2 SV=2
Q5T6F0	DDB1- and CUL4-associated factor 12 OS=Homo sapiens OX=9606 GN=DCAF12 PE=1 SV=1
Q4R3J7	DDB1- and CUL4-associated factor 12 OS=Macaca fascicularis OX=9541 GN=DCAF12 PE=2 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11803	DCAF12; DDB1- and CUL4-associated factor 12	-	Ubiquitin system	ko04121	deepkoala