Detailed information of gene05694.t1 in Actinoscyphia liui

Genomic Location: chr2:25810080...25816768
NR annotation: XP_032223290.2, apoptotic protease-activating factor 1 [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q40253Disease resistance protein L6 OS=Linum usitatissimum OX=4006 GN=L6 PE=1 SV=1
Q6NNP0Autophagy-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=ATG16 PE=1 SV=1
P60838Disease resistance protein SUMM2 OS=Arabidopsis thaliana OX=3702 GN=SUMM2 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17908APAF1_CAPAF-1 helical domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00931NB-ARCNB-ARC domainDomainInterproscan
PF01335DEDDeath effector domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR041452DomainAPAF-1 helical domainInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR011029Homologous_superfamilyDeath-like domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR050349FamilyWD repeat LIS1/nudF dynein regulationInterproscan
IPR001875DomainDeath effector domainInterproscan
IPR002182DomainNB-ARCInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR011044Homologous_superfamilyQuinoprotein amine dehydrogenase, beta chain-likeInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR042197Homologous_superfamilyApoptotic protease-activating factors, helical domainInterproscan
IPR011047Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44129WD REPEAT-CONTAINING PROTEIN POP1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan
GO:0043531Molecular FunctionADP bindingInterproscan

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