Gene detail

Detailed information of gene05718.t1 in Actinoscyphia liui

Genomic Location: chr2:26073587...26083910
NR annotation: XP_020917480.1, uncharacterized protein LOC110254780 isoform X3 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene05718.t1

CTCAAACAGTGAAGTTTTGTTAGAAAGCGTTCTATGTAATTAGACTTTGAGTCGGTTTTTTGCCTATTTTACACCGAAATTTGGACTTACTTCGATCAATAACAAGAGAAGAGAACATCTTTTAGTATTTGGGTCACCTTTTGGTGCGAAGATGGCCATGGAATTGAGCGAAACGGCGACTCTTTCAGAGTCTGACTCGACAAGTGATACCAGTACAAGGTTGATGTCTTTTGACCCTCCACTGAATGATGAGATGGCCATGAGCAATGAGGATTTTGACCATTTGCTGTATGGCAACCCAATAAGTTCTACCATGAAGCAGTCCTTTTCTCCTGACAGTGGTTTCTGCGATGATCAAACAATAATGTCAACTGACACAGAATTTGATAGCATCCCAACTTCTCCAATTTCATTGAACCAGTACTTTTCCCAATCCCCATCCTCCGAGTCTGGCATTGAAGAAGATGAAGATGATGACCACAAGATTGAAAGCCTTGAAGCCAATCAACCTTTGACCAGGTTGTATAACAGTGAAACTCAAGATCCATTATCAACGTCGCTGGTCAATCAGCAAAATACAGAAGCAGTTCCCAATGTGTCCACTGTTGCAGATGCTGTTGAAGAACTCAAACAGCTTCTATACACAGTTGCATCCCATGTATCCTCACTACCAACCATCCCCACGACCACAAATACAATGTCAGTGTCTAGTACAACAATTTTGCCATCATGCAATCAACTAATAAATACACCACTGATGACCATTCCAACTACTTCCCAAAGTGGAACAGCAGCAGCTTGTACAACAAGCCTTGGAGGACACAACCAAGTTGTTACACCGACTCTAAAGGTTAACACTTATTCTAAGTGTGTCCGAAGGAGCAGAAAAGCAAGAGAAAAGCCAAAGCTTGTCATTCTTGATGAACCAGAAGAGAATTACAGAGCACGATATGAAAGTGAAGGCTGTAGAGGACCTATTCATGGTACCAGCGAGAACTCATATCCCACAATCAAAGTGTCAGGTTACAGTGAACCAATCTGGATTACTGTATATCTGGTGACAAGCTCAGGATTACCTCATTATCACTCTATCCATGGACCTGGGTCAACCAAGGTTCCTTGTAAGGAAATAATCCTGCCAGGGGGTATTCCTGCTGTGCAGTTAATGGTTGATCCAGACTCGAAAATGACTGCTATCATGGACTCGCTAAGTATCAGAAGGCTCAGAAATTGGGAAGGAGACAAAGAACTCAAAAAACGAGGGATAGACCCAAGAACGTGGAAAAGAGAACGTAAAGAAGGAAGGTTGTTGTTCCAAGCTGAAATAGTTGGAGAAGATGGTCAATCCAATATAAAGTTGACTTGTAAATCAAGAATATTCCAGTGCAGTTCATCTGGTCCAACAGGAAACCCCGAAATCTGGTGGACTAGTAGAACAGAGGGCTCTGTTGAGGGAAAAGAGGAAATGGGACTCATTGGAAAAAAGTTTCCAACAGATTTGAAAGCGAGGTTCTATGCTGACCTTCCCTCTGGTAAGTCCTGGGAAAGTTATGCCGAGGTCAATAAGAACAAATCACACCAGGGTGCAGCAGTTATTCTTACCCCACCTTACTCAGACCAGGATATCCTTTTTCCTGTGACAGTAAACATTGAACTTATCAGTGGTAATGCTAAGAATCCAAAGTGCAGTGAACCTATAGAGTTCACTTACAAACCCCGACAAGACATTATGATCGCCTCTGTGACACCTAGTGGACATAGCCTGGGAGGGATTTTGGCTGGGCTCCAGGGAGGGTTAACATCCACCACAGCACAGTCCTTATCTTCCTTGGTAACCATGGGAATACCTACACCAACTGTTATCCCCATCCAACCTGCAATGACTACCAGCTGTATGACTATCACTCCTGTTGTACCTGATTTGTCCAAAAAGGAGCCAGATGTCAATGACTGGCAAAGACTTTGCGTCCAAATAAAAGAACTTCAACAAACTGGCCATCTGAATGCATGCCAGATCAAAGACCTCTGTATATTTATTGAGAGAAGAGACTTGCTCTTGCTACAGGCTTTTCGGTCAGCCAATAATGCAGGGAATGGAGATTGA

Protein

Uniprot

Uniprot term	Description
Q04863	Transcription factor RelB OS=Mus musculus OX=10090 GN=Relb PE=1 SV=2

Gene family

Gene family	Subfamily
Transcription Factors Family	RHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00554	RHD_DNA_bind	Rel homology DNA-binding domain	Domain	Interproscan
PF16179	RHD_dimer	Rel homology dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR002909	Domain	IPT domain	Interproscan
IPR037059	Homologous_superfamily	Rel homology domain (RHD), DNA-binding domain superfamily	Interproscan
IPR008366	Family	Nuclear factor of activated T cells (NFAT)	Interproscan
IPR011539	Domain	Rel homology domain, DNA-binding domain	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032397	Domain	Rel homology dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12533	NFAT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan