Detailed information of gene06499.t1 in Actinoscyphia liui

Genomic Location: chr2:34410366...34422868
NR annotation: XP_031557344.1, FACT complex subunit SSRP1-like isoform X2 [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q04678FACT complex subunit SSRP1 OS=Gallus gallus OX=9031 GN=SSRP1 PE=2 SV=2
Q08943FACT complex subunit SSRP1 OS=Mus musculus OX=10090 GN=Ssrp1 PE=1 SV=2
Q9W602FACT complex subunit SSRP1 OS=Xenopus laevis OX=8355 GN=ssrp1 PE=1 SV=1
 Gene family
Gene familySubfamily
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21103PH1_SSRP1-likeSSRP1 PH domainDomainInterproscan
PF03531SSrecogStructure-specific recognition protein (SSRP1)DomainInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF17292POB3_NPOB3-like N-terminal PH domainDomainInterproscan
PF08512Rttp106-like_middleHistone chaperone Rttp106-like, middle domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR038167Homologous_superfamilySSRP1 domain superfamilyInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR048993DomainFACT complex subunit SSRP1-like, first PH domainInterproscan
IPR050454FamilyRTT106/SSRP1 Histone Chaperone/FACT ComplexInterproscan
IPR013719DomainHistone chaperone RTT106/FACT complex subunit SPT16-like, middle domainInterproscan
IPR024954DomainSSRP1, dimerization domainInterproscan
IPR035417DomainFACT complex subunit SSRP1/POB3, N-terminal PH domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR000969FamilyFACT complex subunit SSRP1/POB3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45849FACT COMPLEX SUBUNIT SSRP1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0035101Cellular ComponentFACT complexInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:1902275Biological Processregulation of chromatin organizationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09272SSRP1, POB3; FACT complex subunit SSRP1/POB3-Chromosome and associated proteinsko03036deepkoala

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