Gene detail

Detailed information of gene09476.t1 in Actinoscyphia liui

Genomic Location: chr3:4800942...4832040
NR annotation: XP_020916400.1, E3 ubiquitin-protein ligase TRAF7 isoform X2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene09476.t1

GCTTGATTGAACGTCAAGCAAACACAACAAGAAGGCAGTGTTTTAACCAGGATTTTCTAGACAATAGACCTACTTTAAGCACGTACAACTTGTACGTAATGCATTTACTGGCCATGTAGTGTATGATAGTGATAGTACTGGCCAGCAATAAGAAAGATGTCGGGTATTGTTGAAGGCCAGATGGATAACATGTCGAGATCACGATCTTTTGAGTCTTTAAACTCGAAGGCTCGCATGGAAACAACGTTTGGTCCATCAGCCTATGCCCCTATCACTACCATCAAAAGAGTAGAAGCAGATCATTATATGTATGACACGACAGTCATCGAGAGAACATCTAATAGTCTAACATGTGTGTCTGGTAGTAGTACAGACAGGGATGTTGACAGTGGAACAGCTGGATCAGAAAAGTGTAATTTTGAGATATCGTCATTCAAAAGACATCACCGTACTTCGTCAACAATTTCAGCAAGATCTTTACATTCTATTTCCACAACAACTGAAGATGATGACGATGAAATAGTGTTGTTTGTGGAAGAGCCATCATCCAAGCTATATTGTCCTCTATGTCTACGAGTGTTTAAAGAACCAGTGATAGCATCTTGTGGGCATACATTTTGTCGGACTTGTGTAATGGCAAAAGGAATTGAAAAGTGTCCTGTGGATGACAACAAGCTTTCTGTTGTTGTATCAAACTTAGCTGTTTCAGAGCAGATAGGTGAGCTGTTTATACACTGTAAATATGGCTGCCGTGTGGTCACCAATGGTATGAAACATGAATTTGAAGTCAATCCATCTGGTTGTCCTATGACTACAAAGCTTAGTCACAGACGAGAACACGAGAAAAACTGTCAGTATGCACCAACACAGTGTCCTAACAGTGCACAATGTCCTATGCTTCTTAAAATGGATCTGCAGGATCACTTGAAACACTGTGAGCACATACAATGTCCACATCATAAATATGGCTGCTCTTATGAAAGTAATTATGAGCGTGTGGGACAACATTTAAAAACGTGTAAATTTGAAGCTGTAAAGGAGTTTCTAGCACACACAGACAGTAGACTGGATGAATTGAAGTCATCTTTAAGAGAAAAGGACCAGGAAATTTCATTTCTAAAGAATATGATTTTCAAGTTAACAGAAAGAGTTGATCGTATGGAGAAAACTGTGGATATCAGAATAGATTTACTGGATGAAAGCCAGACAAAGTTATCATCAGACCTTTCTGAATCCAGACAAAGTATTGCTACTATAGAGAGTGACCTTTCAAGTATAGAAGCAAGACTATGGGGAGTTGGAACTTTTGATATACAGCCTCTATTCAAGTGTAAAGGGACTTTTGTTGGCCATACAGGTCCAGTATGGGCATTATGTGTACATGGAGATCTGTTATTCAGTGGTTCATCTGATAAAACTATCAAGGTTTGGGATACACTAACAACATACAAATGTGTGAAAACATTAGATGGACACACTGGCATTGTACTGGCTTTGCGTACACATGAGAAAATGCTATTTAGTGGATCATCTGACTGCACAATTAATATATGGAGCATAGACAGACTAGAATTGCTACAGACTCTACAAGGCCATGAGAATCCTGTTTGTACTTTGGTGTCCAAGAGAGATACATTGTTTAGTGGCTCACTAAAGATGATTAAGGTTTGGAATCTCAGTACCATGGGTATTGTAAAAGAGTTAACAGGTTTAAATCACTGGGTACGAGCTCTTGTTGCTAATGATAACTACCTGTACAGTGGGTCTTACCAAACCATTAAGTTATGGGACCTTGATACACTGGAATGTGTACGTGTACTGCAGACCACTGGTGGCAGTGTATATTCCTTGGCTGTTACTAAAGAATTTATTATCTGTGGAACATATGAAAACTGTATACAGTTATGGGATGCCAGTACTCACAAACTTGTAGAGACATTAAATGGTCATGTTGGAACCGTGTATGCACTAGCAGTTCTCAATGCACCAGGTCAAGCCAAGCTGTTCAGTGCTTCTTATGATAGATCACTCAGAGTGTGGAATCTAGAAAGTTTTACATGTATCCAGACTCTACTGCGTCACCAAGGTAGTGTTGCTGCTCTTGCTCTGTCCAAAGGAAGAATATTCTCTGGTGCTGTAGATAGCACTGTCAAGGTTTGGCAGTGAAACTGGTTTGGTCAGTGTCCTGTATTCCAGGGCAGCTAGCAATGTTCTCTTCATTTAATATGAACAATTAATAACTACTTTGAATTATTTCAAGTCACATATTGAACGTAGAGTGCTCACACTTTAATCCATGTAACAGTACAAACTAATTAGTGCTAAATATAATAACACACCTACAAAAAATACTCATTTCTGATTGGCTGATTGGCTGATTGACTGTGGATTACTGTGCAATTAATTAGGAAATACTACCTTAGTTCTCGAAGAATTAATGAAAAACACCACTTGTATTTGATGAAAGTGGCTTAATACCACGAGTGCGTAGCACGAGTGATATTAACACTTTCATCAAATACGCGTGGTATTTTTCATTAATTCTTCTCGAACGGTGGTGTTTCAGAAAACAAAGGATTTTGTGCTCTTTAGTACTATTAATTTTAGTACTGTTTCATGCTTTAAGTTTGAGCACTCTAGAACCCATAAAATATTATTTTTAGATGCCATTTCTGTATTATTTCTGTATATAAAGGCAGGATGTGTGTAAATAATACCATTGACCTGTCGCATATCCAATTGTTATACATATTTGTAGAAATTATAACCAGGTCATCTATATATAATCAAATTCATGAGCTGTATCATACTACATGTAAATATGTTGTTGAGCTATGTGGCATGGCTTACTAGAGCAGATTTCGTATGACTGTGAAAAATGTATGGACCGTGCAGTGACCGCGTCAGTGCTGTGACCGTGTCAGTGCCGTGACGTATAAAAACGTTTGAAATTCTGTGCTGTGCCGTAACCGTGCCGTGTGCCATGGATACGATATCTGCTCTATTATAACAGTGACCATACAGTAGTTCTATGTGTAAATGAAATGACATTTCTCCATGTTTTACATATTGACTCTTTACTTTATTTTGTTTGTGTTTGCCAGTGGAGAGTAAGGGTTGCCGATGACTAGGAACTGGTCAGGGACAACAATTATTCAAGCTAGGGCAGGGCAATTTCAGGGAATTTTATGTTGATTCAGCTGATTTATTAGCATTGGAGGCTGGAAGAACAGTTCTTCATGAAATTCAACAACAAGCTTTAATTTAGGAACAACAACAACATGCAATTTAGGAACTCAATATATTTTTTGTTCAGAAAAGATTACCTATACACACAAAGTGTGATAATAAATATGTGGAAATACTTTCATTTTAAGTTCTCTTTTGCTCAGTGTTAGCCTCGATTCTGTGAGATGTCTTCTTTAGCATTTTAGTGACAGCCTATCGAAAGGCAAGGTATGTACTTAAACGAATGAATGAATTAATTAACCTTTATTTGAATAGGGTAACTCTTTCAGCGAAAATAAAACGCTGTTATCAATAGAGGCCCTGTAACTATAAGATAAAATTACAATATATACAATAAGATTAATG

Protein

Uniprot

Uniprot term	Description
Q922B6	E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus OX=10090 GN=Traf7 PE=1 SV=1
Q6Q0C0	E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens OX=9606 GN=TRAF7 PE=1 SV=1
Q91431	Nuclear factor 7, ovary OS=Xenopus laevis OX=8355 PE=2 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR039241	Family	Ribosomal RNA-processing protein Rrp9-like	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19865	U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030515	Molecular Function	snoRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10646	TRAF7, RFWD1; E3 ubiquitin-protein ligase TRAF7	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala