Detailed information of gene10639.t1 in Actinoscyphia liui

Genomic Location: chr3:24013431...24030608
NR annotation: XP_031575282.1, E3 ubiquitin-protein ligase RBBP6-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7Z6E9E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1
P97868E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5
B9DFV2E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyULD|UFD|DWNN
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13696zf-CCHC_2Zinc knuckleDomainInterproscan
PF08783DWNNDWNN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025829DomainZinc knuckle CX2CX3GHX4CInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR014891DomainDWNN domainInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15439RETINOBLASTOMA-BINDING PROTEIN 6Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10624RBBP6; E3 ubiquitin-protein ligase RBBP6EC:2.3.2.27
Ubiquitin systemko04121deepkoala

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