Detailed information of gene12219.t1 in Actinoscyphia liui

Genomic Location: chr3:46955110...46971568
NR annotation: XP_020907558.1, WD repeat, SAM and U-box domain-containing protein 1 isoform X2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5FVN8WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Wdsub1 PE=2 SV=1
Q9D0I6WD repeat, SAM and U-box domain-containing protein 1 OS=Mus musculus OX=10090 GN=Wdsub1 PE=2 SV=1
Q8N9V3WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens OX=9606 GN=WDSUB1 PE=1 SV=4
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 activity RING|U-box
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04564U-boxU-box domainDomainInterproscan
PF07647SAM_2SAM domain (Sterile alpha motif)DomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR003613DomainU-box domainInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR052085FamilyWD repeat, SAM and U-box domain-containingInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46573WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24764WDSUB1; WD repeat, SAM and U-box domain-containing protein 1-Domain-containing proteins not elsewhere classifiedko04990deepkoala

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