Gene detail

Detailed information of gene17317.t1 in Actinoscyphia liui

Genomic Location: chr4:61036974...61044908
NR annotation: XP_048579020.1, uncharacterized protein LOC125560735 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene17317.t1

ATGTATCACCGAGCTCCTTTAATTGTCCTTATCCTTGCTGCCTATTTCTTCAAAGCTGTCTTGGACTACAATTATCTAAACCAGGCATTTATTCAAGCATCTAGCATCGTGGTTAAATTGCCATCTTATAAAATCAGTCGACCGTATTGGACTTATACATTTGCATATATTAAGTCACGCAACTCCAATGCGTTCACGCCACAGCATCTCCAACTCCAGCGTTATACAGGACTGCTACAGTTGCTATTTATCATCGCTAGTGACTGCACTTTGCTGAATCCTGGTCCGCCAAAATACCCTTGCGGGCTCTGCGAGAAACCAGTGAGATCAAACCAGAAGGCAATATGCTGTGATGAATGTGACAAATGGTATCACGGCAAGTGCATTTGCATGTCTGCCCAGTCCTACGATAAATTTGGCAACGACTCAAAGCTTGTTTGGCTATGCAATGGATGTTTATTTCCAAATTTCTCAACTACCTTTCTACTGGACAACATCTGCGAATTTACAGACACCAACAGCTATGCCCCCCTAGAGGGGATTGACACTATCGGAATCGGACCTCCACTTCATGCATCCAGCCCGGTACGCCCTCAAACATCTAGCCGCCCAAAACATCACCACAGAAAAAAACTGAAATGTCTTTCTCTTAACTGCAATGGCATTAAGAGCGCCACCAAGAATGCTAACTTCCGCGCCTTATTGGATCTCCATAAACCAGATATTGTATTTGGTTGCGAATCCAAGTTGGATCCTTCCCATCCCACATATTCCATCTTCCCTGAAGGGTACGAGGTCGTACGTAACGACAGAAACTGTTTTGGAGGCGGCGTATTTATTGCTACGAAGAGTGATCTCGTAACGAAAGAAGAACATCGCTACTACTCTGGTACTTGCGAAGTCTCGTGGATCTCCTTACAGCTCGTCAAAGCTAAGAAGCTACTGCTTGGCAGTTTCTACCGCCCACCATCTACCAGCATTGATCACCTGTTAGACCTTGACGACTCTCTGAGCAAGATATATACCTCCGCCAGGCCCCCAAACGTCAGTTTGTGTGGCGATTTCAATTGCAGCTCCATCGATTGGTCCAACGTTGATCTCAAACCGAACTACTCTCCTCTTGATTCTGCCCTTCTGGACATTGTTGCTAAATACGGCCTAAACCAACATGTAACATCAGCAACAAGACTCGCTTCTGGTAATCTCCAGGATCTAACGCTATCTTCCTCGCCCAACCTAATACCGTCCTGTCATGTTACCTCTGGGATAAGCGATCACGAGGCTATCTTATTTGAAATCGACCTCACGCCGAAGTATGTCTTTAAGGCTCCTCACAAGGTGTACCAATTCCATAAAGGCAACTACGACAATCTAAGATCACATATGTCCACTTACAACTCCACATTCTTTGGCAGTGATCCCAATAAAAGATCTGTCGAAGAAAACTGGGACGAATTTGCAAGTCATCTCAGCGCTGCGACCGACCTTCATATACCACACAAATTCACTAAATCCAAACGTCACCTCCCTTGGGTCTCATTACCAGTCAAGCGTCAAATGCGTCGTCGTGATCGTGCTTACAAACGTGCCAAGCATTCCGTTAAAAATCATCACTGGGAAATATACAAGAATCTTCGTAATTCCACGACTAAAGCTGTTAAAGTAAACCGAGATAAGTATGTGTCCGACATCATGGGTTCTTTAGATTCAGACGATCGTGGTGGCGTAAAAAGGGCTTGGTCATATTTAAAATTGCTGCGTACTGAGTCTATTGGAATTAGCACCTTGTTCTGGCAGGATACTGTTCTAACATCAGATTCCGCGAAAGCCGAGGCTCTAGCCAGCCAATTTTCGAGCATCTTCACTAAGGAAGACCTGGTCAACATGCCCAGTACTGGTCCGACCCTGTTAAGGGAGTCTCAAATAAAGTATGTATGTACATGTCTGTGTTATCTCAATGACGTTATCGTATTCGGTCGTGACCTCAGTGAGCATTGTGAAAGGCATAAGACCGTACTTAGCAGACTTAGGGAGCATAACCTTCGCGCAAGATTATCGAAATGCAAGTTTGCTGCCCGCGAAGTCCGTTACCTGGGACACATTATCTCACAAGAAGGAATTCGACCAGACCCGAGTAAGATATTTGAGGTAAACGATTTACAGCCACCTAACACCGTGAAAAGCGTTTGTAGTTTCCTAGGTCTCGCAGGCTACTATCGGAAGTTTATCCCAGGATTCACGACAATATCAGCGCCTCTCCTTCGCCTTACCGAAAAGAACGCACAGTTTCACTGGACAGACGAATGCAAAAATGCTTTTAGAATGCTACAATTTTTGTTATGCTCAACCCCCATCCTTTGCTATCCTAAGTGGGATCGACCGTTCATATTGCAAACTGACGCATGGAGCTATATTCCCTTTCAACAAGGTGAAATAGCATGTCCCGCAAGGGAAATCAGTGATTTTGAGTTCGTCAACTGTGCTCCCAACACTGTTAATCCGGGAGTTCTGAGGGCAAGGCCACTAAGGCTCAGACAACAAATAAACCCACCGAATCGTTATGGATTTCATTAA

Transcript

gene17317.t1

Protein

Uniprot

Uniprot term	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00628	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007508	Biological Process	larval heart development	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0061343	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan