Detailed information of gene20335.t1 in Actinoscyphia liui

Genomic Location: chr5:45180292...45203143
NR annotation: XP_031561012.1, AT-rich interactive domain-containing protein 4A-like isoform X2 [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P29374AT-rich interactive domain-containing protein 4A OS=Homo sapiens OX=9606 GN=ARID4A PE=1 SV=3
F8VPQ2AT-rich interactive domain-containing protein 4A OS=Mus musculus OX=10090 GN=Arid4a PE=1 SV=1
Q4LE39AT-rich interactive domain-containing protein 4B OS=Homo sapiens OX=9606 GN=ARID4B PE=1 SV=2
 Gene family
Gene familySubfamily
Transcription Factors FamilyARID

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01388ARIDARID/BRIGHT DNA binding domainDomainInterproscan
PF11717Tudor-knotRNA binding activity-knot of a chromodomain FamilyInterproscan
PF08169RBB1NTRBB1NT (NUC162) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001606DomainARID DNA-binding domainInterproscan
IPR002999DomainTudor domainInterproscan
IPR025995DomainRNA binding activity-knot of a chromodomainInterproscan
IPR036431Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR012603DomainARID4A/B, PWWP domainInterproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR051232FamilyAT-rich Interactive Domain/SWI1 Chromatin RemodelingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13964RBP-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000976Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19194ARID4A, RBP1; AT-rich interactive domain-containing protein 4A-Chromosome and associated proteinsko03036deepkoala

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