Gene detail

Detailed information of gene25096.t1 in Actinoscyphia liui

Genomic Location: chr7:21506854...21518180
NR annotation: XP_020907038.1, HMG box-containing protein 1 isoform X2 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene25096.t1

TTATATCAAAGAAAAGACGATGAAATCGTGATAATATTTTCACCAACCGTCGGGGGGTTATCCCGCCAAAAAAACTGCAAGGTAAGCCATTTACGAGTTGATGCACGCGTCTGGCTTCATTGATTTCCAATTCAAACTATTTTATCGCCGACATTTTACAACGATTCCATGCCGACAGCGAAATATAGGGCTTCCTATAGATTTACAGTCATTGTAGAGAAATACGAGGTACTATTATAAATCTAATGGAATGATTCAAGTCACGTCCAAAGCCGGTAAAGCTCAATCAATGTGAAATACTGTAAAGTAGAGTAAGTGATACAATTTGGTATCGATTTCCGATTGTTTTACAGCCAAATACTTGTACTAACTCATCCGAAATACGGTAAGAAACTCATAGGAAGAAAATAAATCTTGTAATATTTCAATTGGAAAAATCCTGTAATATTTTTACAACTCACTTTCATTTTCGTTACTTGCTGCTCGCGTGAATAGTCAATAACAGTAGAGAAATCCGGTTTTTGAATTCCTGCTTATTTAGTCATGTTAATTTCTCTTCCTTTGTATTCCCGAATTGAAATTCCGTTTCACCGTATTGTATTATATAGGAACAAAATCTTGCCTTGGCCTGTTCCTTCTGGTGTCTTAATATATATCGCTTTGAAACGCCATCTGCTGTAGTATAAAGAAGGACAAACTTCGCTACATTATAGTTAATATCCGAAAAACTATGTGAACAGATCACGGATATGAAGTTACCTTTGAGCAAATGATGTTTATTGTGTAGTTTAATAGAAGAAAAGAATGAGAACTTCAAAGGACTGGTGTAGTTTGCGTCATCATGGTTTCTTGATGTATAAATTCCTCAAAGTTGATATGCACCCAATACAGGACAACCACAAGTGCACACACTGCCGTAAGTCGTTCAAGAGTTCTAACGGGCTGAAATACCACATCGAGAAAACTCACTCTGACGAAGAATACAGTAAAATGAGTGGGTTAATATTCAACGAAGCGAGGACGAAACCGCCCAAGGCCATCCCCCCAGCCCTTGACCTCGACAAGAGCAACGACTTTCCTTTTGGTATCCTTGAAGAGTTTGCGTTTATAGCGACTGGTCCGCAGAGTCCTTTAGTGCAGGAAGTAAATAGCTTTGCTAATGAAGCAGAAAGTCCGGGAGATCCCCGAGATCTTGACTACAACATTCCAAGCGTGGAAAGCGATGCAAGTGCTACGTCTCCCCTCCCCACCCCCACGTCGTACAGACACCCCACACCCCCACCCACCGCGTGGAGTTGTTTCTTGGATGGTACAAGAATACAGTTGGAAGGCGAGGAGGAGTGGAAGTACGCTGAGGATCTTGGGAATTATGATATCCCTAACGTGTGTGACCCTAATGATGGGCTAATGCTGACGTCTTGTGAGAGGATCGTCCATGTTGTCGGGCATCTTGAGGACACGGAGATTTTGGCCTCTTTCTCCTCGACGTCTGTGAACCTGCCAAGCCTACGAGCTGAAGTAGCTGGCGATCATCCTTTCTTTGTTAAGAATAAAGGGTGGAGCTCTTTTCAACCTTCAAGGACCCTGAAGACCTATGGGATGGAGAGTGAGACGTTGATGAGAGGCGACGTATGTCTGCCATCATCGCACCCTATTGTTATGAAGGCTAAACGAACGGGAAAAACTTCCAACATGTTTGACTTCACTGACCAAGATTCCAATGCTGCCTCGACACTAAGCAGCATGGCCAAGGATCGACAGAAACACAGATCGCGTCAATCCAAGTTACCCTCGGTCCAGTCTGTCGTGTCTAACGCGACATCAGAGATCAGACAGCAGCTCACTAAACGACCAATGAATGCGTTCATGCTGTTTGCCAAGAAGTACAGACTAAAGATTACTAAAGCACATCCTGGTAAAGATAACAGAGCCATTAGTGTAATTCTTGGCGATCAATGGAAGTCCATGAAGCCTGAGCTGCGAAGTCAGTACGTCCTTGAAGCCAAGCGGCTAGCTGAAGAGCACAAGAAAGTCAATCCAGACTGCTGGAAGAGAAAACGAAACGTTGGACAGGGTCGAACAAAGGTACCAAGTCTCAAAAGACTATAACTGCGTGTTATACATGTAAGACGAAGATAGCTAGGTTGTTTTCTTATGCATGGATCAACTTAATATATTCCTGTTTTATAGTCTATAGTGGATCAGTTAGTTATTTTGTTTCCCAAGGAAACAGAACTTATTTTTGGTTTAAATTTACTAGATATTGGGTAGGGGTTCTTTCTAAACATCTCCCATGATATTTCATGGATTGAGGCCAAAGGACAGTATTTTAAGTAGTCTGTGTACAGCCGTACCCTCCCCACCCCTCTCTCAAAGATTTAGACCATGATCCAGTCGTGATACAGATCCAGACCCTGTTCTTGCGCCACATCGCTTTTGCTAAATCTATCTAATAAGCAACAGTCTCACGAGAAACCATTAAATAACTGAGTCTGAGTATGTTACTTTGTTTTCTCCATCCTTCCCCTCTAAACTGTCACTATTGCATGGACAATCAAATAGCTAACTGGATGGCTTGTCTTTTTCAATAGAACTGATTTCGTATGACTGAAAAAACTGCGTGCATGCCTCAGCATTTGATTGGCCAAATTTTGTTCTCATCCAACCAAAGCTCGTCGGCTACGCAGGAGCTACAGCCTATATAATCGCAACGATCGCAACGATCGCAGAAACCGGTGTTCTGCGATGGTTGCGATCGCTGGTTTTTATAACAATTTCTCAATCACAATAATCTAAAGGATCGCAACTATCACAACGATTGTAGAGATCGAAGAATTTTGTGTTTTTTTAACGATCGCAAAGATTGCAGAACACTTTTTTCTTCGAACGCTGCGATCCTTGCGATCGTTACGATTATATGGAAACCAGGCTCAGTATAGGCGGCGTTTTTTTACAGTACGGAGTTCTTCATAGTCATACGAGAACTGAGCTTTACTTTGAGTTGATAGTGAATTGGGTTGTTATATTAATGACCCCGCTATTATTGTAAATATAATTGTAATTTATAGCCATAGACCAAGCCATAACAGTATTACATTAAGGAACTGCCTTGTGATAGGTGGTATACGGTACACGGCTGATTCTCCATGAGAGATGACTAGAGTAGGGTTAAAGTACGTAGAGTATGATGAAGTGAGAGTGTGTGCTCTCCTTTCTCTCTTCTCCTCCATTATACTTGGGGTCATTTAGTCTTAGACAAATCTAGTTGAGACAAATGCAATTTTTTTGTTTTTGTCATACGGTCATCAATCAATTGCCATAACTAAAACGTTTAAAGTTTGTAACCAACCCTCCTTAATTCCTCATCTCATCACTGTTTCAGCAAAATGTTGCAACTCATGTCAATATTACAGACATGGTATTACGACATTGAAGATGGGTTAGGGGCACAGGGAAAAAATATATAAATCCTAATTTGTCATATTCCCATTTTGAATCAATGGGAATA

Protein

Uniprot

Uniprot term	Description
Q2KJ34	HMG box-containing protein 1 OS=Bos taurus OX=9913 GN=HBP1 PE=2 SV=1
O60381	HMG box-containing protein 1 OS=Homo sapiens OX=9606 GN=HBP1 PE=1 SV=2
Q62661	HMG box-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Hbp1 PE=1 SV=2

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08517	AXH	Ataxin-1 and HBP1 module (AXH)	Family	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003652	Domain	Ataxin, AXH domain	Interproscan
IPR039655	Family	HMG box-containing protein 1	Interproscan
IPR036096	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15499	HMG BOX-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21644	HBP1; HMG box transcription factor 1	-	Transcription factors	ko03000	deepkoala