Detailed information of gene27438.t1 in Actinoscyphia liui

Genomic Location: chr8:23058562...23079885
NR annotation: XP_020895326.1, nucleoporin NUP188 homolog [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5SRE5Nucleoporin NUP188 OS=Homo sapiens OX=9606 GN=NUP188 PE=1 SV=1
Q6ZQH8Nucleoporin NUP188 OS=Mus musculus OX=10090 GN=Nup188 PE=1 SV=2
F6WXT2Nucleoporin NUP188 OS=Xenopus tropicalis OX=8364 GN=nup188 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628PHDPHD-fingerDomainInterproscan
PF10487Nup188_NNucleoporin Nup188, N-terminalRepeatInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF21093Nup188_N-subdom_IIINucleoporin Nup188, N-terminal subdomain IIIRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR018864DomainNucleoporin Nup188, N-terminalInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR044840FamilyNucleoporin Nup188Interproscan
IPR048883DomainNucleoporin Nup188, N-terminal subdomain IIIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31431NUCLEOPORIN NUP188 HOMOLOGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0017056Molecular Functionstructural constituent of nuclear poreInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0006405Biological ProcessRNA export from nucleusInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0044611Cellular Componentnuclear pore inner ringInterproscan

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