Detailed information of gene29637.t1 in Actinoscyphia liui

Genomic Location: chr10:17380805...17390809
NR annotation: MCG8642381.1, cold-shock protein [Desulfobacterales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P72366Cold shock-like protein CspA OS=Stigmatella aurantiaca (strain DW4/3-1) OX=378806 GN=cspA PE=3 SV=1
P0A9Y1Cold shock protein CspA OS=Escherichia coli O157:H7 OX=83334 GN=cspA PE=3 SV=2
P0A9Y0Cold shock protein CspA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=cspA PE=3 SV=2
 Gene family
Gene familySubfamily
Transcription Factors FamilyCSD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR012156FamilyCold shock, CspAInterproscan
IPR011129DomainCold shock domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03704cspA; cold shock protein-Transcription-deepkoala

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