Detailed information of gene29638.t2 in Actinoscyphia liui

Genomic Location: chr10:17395653...17399664
NR annotation: EJD6609165.1, transcription antiterminator/RNA stability regulator CspE [Providencia rettgeri]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P63237Cold shock-like protein CspE OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806 GN=cspE PE=3 SV=2
P63238Cold shock-like protein CspE OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=cspE PE=3 SV=2
Q89A90Cold shock-like protein CspE OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=cspE PE=3 SV=3
 Gene family
Gene familySubfamily
Transcription Factors FamilyCSD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR011129DomainCold shock domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR050181FamilyCold shock domain-containing proteinInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan

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