Detailed information of gene29641.t1 in Actinoscyphia liui

Genomic Location: chr10:17423809...17430336
NR annotation: XP_020896672.1, protein lin-28 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q94C69Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1
P27484Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1
O65639Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051373FamilyLin-28 homolog RNA-binding proteinInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR011129DomainCold shock domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46109PROTEIN LIN-28Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0031054Biological Processpre-miRNA processingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18754LIN28; protein lin-28-Messenger RNA biogenesisko03019deepkoala

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