Detailed information of gene29675.t1 in Actinoscyphia liui

Genomic Location: chr10:17998081...18011415
NR annotation: XP_031570075.1, pre-mRNA-processing factor 17-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O60508Pre-mRNA-processing factor 17 OS=Homo sapiens OX=9606 GN=CDC40 PE=1 SV=1
Q9DC48Pre-mRNA-processing factor 17 OS=Mus musculus OX=10090 GN=Cdc40 PE=1 SV=1
O43071Pre-mRNA-processing factor 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp17 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR032847FamilyPre-mRNA-processing factor 17Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43979PRE-MRNA-PROCESSING FACTOR 17Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12816CDC40, PRP17; pre-mRNA-processing factor 17-Spliceosomeko03041deepkoala

TOP