About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8000035.1MULTIPLE PDZ DOMAIN PROTEIN
CAI8000033.1
CAI8000039.1TANDEM PH DOMAIN CONTAINING PROTEIN
CAI8000043.1
CAI8000041.1DYNACTIN 1-RELATED MICROTUBULE-BINDING
CAI8000053.1COBALT-PRECORRIN-6B C(15)-METHYLTRANSFERASE (DECARBOXYLATING)
CAI8000055.1MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC
CAI8000057.1
CAI8000059.1
CAI8000061.1MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC
CAI8000065.1MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC
CAI8000063.1MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC
CAI8000067.1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
CAI8000069.1GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
CAI8000071.1BIOTIN PROTEIN LIGASE
CAI8000073.13-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE
CAI8000075.13-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE
CAI8000077.1HISTIDYL-TRNA SYNTHETASE
CAI8000079.1ATP PHOSPHORIBOSYLTRANSFERASE ATP-PRTASE
CAI8000081.1HISTIDINOL DEHYDROGENASE HDH
CAI8000087.1HISTIDINOL DEHYDROGENASE HDH
CAI8000083.1HISTIDINOL DEHYDROGENASE HDH
CAI8000085.1HISTIDINOL DEHYDROGENASE HDH
CAI8000089.1HISTIDINOL DEHYDROGENASE HDH
CAI8000091.1HISTIDINOL DEHYDROGENASE HDH
CAI8000093.1HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED
CAI8000095.1HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED
CAI8000097.1IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7
CAI8000099.1ENOYL-COA HYDRATASE
CAI8000101.1STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL
CAI8000103.1
CAI8000105.1LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE
CAI8000107.1RHAMNOSYLTRANSFERASE WBBL
CAI8000109.1CYSTEINYL-TRNA SYNTHETASE
CAI8000111.1TRANSCRIPTIONAL REGULATOR, GNTR FAMILY
CAI8000119.1THIOPURINE S-METHYLTRANSFERASE
CAI8000121.1
CAI8000127.1THROMBOSPONDIN
CAI8000125.1PROPERDIN
CAI8000123.1SPONDIN
CAI8000131.1PROPERDIN
CAI8000129.1PROPERDIN
CAI8000133.1SPONDIN
CAI8000135.1SPONDIN
CAI8000139.1PROPERDIN
CAI8000141.1PROPERDIN
CAI8000143.1PROPERDIN
CAI8000137.1THROMBOSPONDIN
CAI8000147.1TUBBY-RELATED
CAI8000149.1TUBBY-RELATED
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