About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8029851.1PROTEIN-EXPORT MEMBRANE PROTEIN SEC
CAI8029852.1PROTEIN-EXPORT MEMBRANE PROTEIN SEC
CAI8029853.1L-THREONINE 3-DEHYDROGENASE
CAI8029854.1RIBULOSE-5-PHOSPHATE-3-EPIMERASE
CAI8029855.1-
CAI8029856.1BCDNA.GH03377
CAI8029857.1-
CAI8029858.1BETA-GALACTOSIDASE
CAI8029859.12-HYDROXYACID DEHYDROGENASE-RELATED
CAI8029860.1HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED
CAI8029861.1TRANSCRIPTIONAL REGULATORY PROTEIN
CAI8029862.14-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC
CAI8029864.1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
CAI8029863.1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
CAI8029865.1CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA
CAI8029868.1DNA REPLICATION AND REPAIR PROTEIN RECF
CAI8029866.1DNA REPLICATION AND REPAIR PROTEIN RECF
CAI8029867.1DNA REPLICATION AND REPAIR PROTEIN RECF
CAI8029870.1DNA GYRASE/TOPOISOMERASE SUBUNIT B
CAI8029869.1DNA GYRASE/TOPOISOMERASE SUBUNIT B
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