About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s004.g0616.t1REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
Lsat_s004.g0617.t1ATP SYNTHASE GAMMA CHAIN
Lsat_s004.g0618.t1SORTILIN RELATED
Lsat_s004.g0619.t1HIGH MOBILITY GROUP PROTEINS HMG-A AND C
Lsat_s004.g0620.t1HEMK METHYLTRANSFERASE
Lsat_s004.g0621.t1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Lsat_s004.g0622.t1SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
Lsat_s004.g0623.t1PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED
Lsat_s004.g0624.t1-
Lsat_s004.g0625.t1-
Lsat_s004.g0626.t1-
Lsat_s004.g0627.t1-
Lsat_s004.g0628.t1-
Lsat_s004.g0629.t1COPINE
Lsat_s004.g0630.t1FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED
Lsat_s004.g0631.t1MITOCHONDRIAL RIBOSOMAL PROTEIN S25
Lsat_s004.g0632.t1ARMADILLO REPEAT CONTAINING PROTEIN
Lsat_s004.g0633.t1-
Lsat_s004.g0634.t1INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN
Lsat_s004.g0635.t1-
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