About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8030691.1QUINONE OXIDOREDUCTASE PIG3-RELATED
CAI8030692.1BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH
CAI8030693.1BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH
CAI8030694.1HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE
CAI8030695.1CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED
CAI8030696.1-
CAI8030697.1LEU/ILE/VAL-BINDING ABC TRANSPORTER SUBUNIT
CAI8030698.1LEU/ILE/VAL-BINDING ABC TRANSPORTER SUBUNIT
CAI8030699.1NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3
CAI8030700.1NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3
CAI8030701.1IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG
CAI8030703.1CYSTEINE DESULFURYLASE FAMILY MEMBER
CAI8030702.1CYSTEINE DESULFURYLASE FAMILY MEMBER
CAI8030705.1HISTONE DEACETYLASE HDAC1-RELATED
CAI8030704.1HISTONE DEACETYLASE HDAC1-RELATED
CAI8030706.1MULTIFUNCTIONAL CCA PROTEIN
CAI8030707.1HYPOTHETICAL DIHYDROXYACID DEHYDRATASE (EUROFUNG)-RELATED
CAI8030708.1-
CAI8030709.1GLYCYL-TRNA SYNTHETASE
CAI8030710.1METHIONINE SYNTHASE
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