About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8032890.1DNA TOPOISOMERASE I
CAI8032892.1DNA TOPOISOMERASE I
CAI8032893.1PKSB
CAI8032894.1PIG-M MANNOSYLTRANSFERASE
CAI8032896.137S RIBOSOMAL PROTEIN S22
CAI8032895.137S RIBOSOMAL PROTEIN S22
CAI8032897.1DIPHOSPHOMEVALONATE DECARBOXYLASE
CAI8032898.1DYNEIN LIGHT INTERMEDIATE CHAIN
CAI8032900.1DYNEIN LIGHT INTERMEDIATE CHAIN
CAI8032899.1DYNEIN LIGHT INTERMEDIATE CHAIN
CAI8032901.1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
CAI8032903.1SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT
CAI8032902.1SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT
CAI8032905.1DYNACTIN 1-RELATED MICROTUBULE-BINDING
CAI8032904.1-
CAI8032909.1MTG8 ETO EIGHT TWENTY ONE PROTEIN
CAI8032908.1MTG8 ETO EIGHT TWENTY ONE PROTEIN
CAI8032907.1MTG8 ETO EIGHT TWENTY ONE PROTEIN
CAI8032906.1MTG8 ETO EIGHT TWENTY ONE PROTEIN
CAI8032910.1MTG8 ETO EIGHT TWENTY ONE PROTEIN
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