About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8033987.1CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE
CAI8033992.1ADENYLOSUCCINATE SYNTHETASE
CAI8033994.1DIHYDRODIPICOLINATE SYNTHASE
CAI8033993.1DIHYDRODIPICOLINATE SYNTHASE
CAI8033996.1DEHYDROGENASE, PUTATIVE-RELATED
CAI8033995.1DEHYDROGENASE, PUTATIVE-RELATED
CAI8033997.1DIHYDRODIPICOLINATE REDUCTASE
CAI8033998.1PHYTOENE DEHYDROGENASE
CAI8034000.1HEAVY METAL TRANSPORTER
CAI8033999.1HEAVY METAL TRANSPORTER
CAI8034001.1METAL TRANSPORT PROTEIN HI_1621-RELATED
CAI8034003.1TRNA SULFURTRANSFERASE
CAI8034002.1TRNA SULFURTRANSFERASE
CAI8034004.1-
CAI8034006.1D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090)
CAI8034005.1D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090)
CAI8034007.1TRANSCRIPTION TERMINATION FACTOR NUSA
CAI8034008.1TRANSLATION INITIATION FACTOR IF-2-RELATED
CAI8034009.1TRNA-PSEUDOURIDINE SYNTHASE
CAI8034010.1TRNA-PSEUDOURIDINE SYNTHASE
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