About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8035711.1RESPIRATORY NITRATE REDUCTASE
CAI8035712.1NADH DEHYDROGENASE SUBUNIT 1
CAI8035713.1NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5
CAI8035714.1NADH DEHYDROGENASE
CAI8035715.1ATP SYNTHASE DELTA CHAIN
CAI8035716.1ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
CAI8035717.1ATP SYNTHASE GAMMA CHAIN
CAI8035718.1-
CAI8035719.1ATP SYNTHASE
CAI8035720.1ATP SYNTHASE
CAI8035721.1UNNAMED PRODUCT-RELATED
CAI8035722.1N-ACETYLMURAMOYL-L-ALANINE AMIDASE
CAI8035723.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
CAI8035724.1VALYL-TRNA SYNTHETASES
CAI8035725.1VALYL-TRNA SYNTHETASES
CAI8035726.1EXPRESSED PROTEIN
CAI8035727.1LIGAND BINDING DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_6G14370)-RELATED
CAI8035728.1HYDROXYPYRUVATE ISOMERASE
CAI8035729.1L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE
CAI8035730.1BETA-LACTAMASE
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