About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8037691.1CITRATE SYNTHASE
CAI8037692.1GLYCINE DEHYDROGENASE, DECARBOXYLATING
CAI8037693.1GLYCINE DEHYDROGENASE, DECARBOXYLATING
CAI8037694.1GLYCINE DEHYDROGENASE, DECARBOXYLATING
CAI8037695.1GLYCINE CLEAVAGE SYSTEM P-PROTEIN
CAI8037696.1GLYCINE CLEAVAGE SYSTEM H PROTEIN
CAI8037697.1-
CAI8037699.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
CAI8037698.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
CAI8037700.1RIBONUCLEASE J
CAI8037701.1TYPE-5 URACIL-DNA GLYCOSYLASE
CAI8037702.1N UTILIZATION SUBSTANCE PROTEIN B-RELATED
CAI8037703.1MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL
CAI8037704.1VACUOLAR PROTEIN SORTING VPS16
CAI8037705.1-
CAI8037706.1-
CAI8037707.1UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN
CAI8037711.1DISCS LARGE
CAI8037712.1DISCS LARGE
CAI8037710.1DISCS LARGE
TOP