About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Osteichthyes (Parvphylum); Actinopterygii (Gigaclass); Actinopteri (Superclass); Teleostei (Class); Perciformes (Order); Cottoidei (Suborder); Liparidae (Family); Pseudoliparis (Genus); Pseudoliparis swirei (Species)

Original Name

Pseudoliparis swirei Gerringer & Linley, 2017

Original Description/Redescription

1. Gerringer M E, Linley T D, Jamieson A J, et al. Pseudoliparis swirei sp. nov.: a newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench[J]. Zootaxa, 2017, 4358(1): 161–177-161–177. (Gerringer et al., 2017)

Partial Description

Holotype is immature. Ripe females had eggs up to 9.4 mm diameter, among the largest teleost eggs recorded, 0.4 mm smaller than the largest record. The eggs were unsorted within gonad, with the largest eggs free and interspersed within a matrix of smaller eggs. No developmental structures were visible within even the largest eggs. Two distinct size classes of eggs present with up to 23 large eggs (>5 mm) and up to 851 small eggs of less than half the diameter of the larger size class. There were rarely intermediate stages (Figure 7). Individuals with only small eggs had maximum egg sizes ranging from 0.7 to 1.4 mm. Genital papilla visible in freshly collected males, oriented anteriorly

Etymology

The Mariana Trench famously houses the ocean’s deepest point, at Challenger Deep, named for the HMS Challenger expedition which discovered the trench in 1875. Their deepest sounding of 8,184 m, then the greatest known ocean depth, was christened Swire Deep after Herbert Swire, the ship’s First Navigating Sublieutenant (Corfield 2003). We name this fish in his honor, in acknowledgment and gratitude of the crew members that have supported oceanographic research throughout history

Distribution/Locality

Known only from the Mariana Trench at capture depths from 6,898–7,966 m, individuals likely this species were recognized in video at depths 6,198–8,098 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00 25,738/4,21944-21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10101SODIUM-BILE ACID COTRANSPORTER
HS10102PROTEIN MAX MYC-ASSOCIATED FACTOR X
HS10103LD44762P
HS10104GLUTATHIONE PEROXIDASE
HS10105RAP GTPASE-ACTIVATING PROTEIN
HS10106
HS10107LP21163P
HS10108JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1
HS10109AGAP002036-PA
HS10110RHO FAMILY GTPASE
HS10111CATION TRANSPORT PROTEIN CHAC-RELATED
HS10112NOTCH LIGAND FAMILY MEMBER
HS10113PIRNA BIOGENESIS PROTEIN EXD1
HS10114GUANINE NUCLEOTIDE EXCHANGE FACTOR
HS10115
HS10116UPF0338 PROTEIN
HS10117CHONDROLECTIN VARIANT CHODLFDELTAE.
HS10118FORKHEAD BOX PROTEIN
HS10119MIRROR-IMAGE POLYDACTYLY GENE 1 PROTEIN
HS10120GLUTAREDOXIN-LIKE PROTEIN C5ORF63 HOMOLOG
HS10121TNF RECEPTOR ASSOCIATED FACTOR
HS10122REST COREPRESSOR COREST PROTEIN-RELATED
HS10123
HS10124RUBY-EYE2-LIKE PROTEIN
HS10125ZINC FINGER PROTEIN 839
HS10126CYCLIN-DEPENDENT KINASE 2-INTERACTING PROTEIN
HS10127CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5
HS10128PROTEIN TRANSPORT PROTEIN SEC23
HS10129SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54
HS10130COFILIN-RELATED
HS10131ARSENITE METHYLTRANSFERASE
HS10132BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A
HS10133SORTING NEXIN FAMILY MEMBER
HS10134PROTEASOME SUBUNIT ALPHA/BETA
HS10135RBP-RELATED
HS10136MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9B
HS10137KIAA0586 PROTEIN
HS10138MYELIN TRANSCRIPTION FACTOR 1-RELATED
HS10139DAPPER-RELATED
HS10140GALECTIN
HS10141F-BOX ONLY PROTEIN 34/46 FAMILY MEMBER
HS10142
HS10143HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
HS10144SCAFFOLD ATTACHMENT FACTOR B-RELATED
HS10145TATA-BOX BINDING PROTEIN
HS10146BECLIN 1-ASSOCIATED AUTOPHAGY-RELATED KEY REGULATOR
HS10147MITOGEN-ACTIVATED PROTEIN KINASE-BINDING PROTEIN 1
HS10148T-BOX PROTEIN-RELATED
HS10149
HS10150TYROSINE-PROTEIN KINASE RECEPTOR
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