About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8039731.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8039732.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8039734.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8039733.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8039735.1DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC
CAI8039736.1DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC
CAI8039737.1DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC
CAI8039738.1RADICAL SAM PROTEINS
CAI8039739.1SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA
CAI8039740.1NUDIX HYDROLASE 23
CAI8039741.1PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER
CAI8039742.1INNER MEMBRANE ABC TRANSPORTER
CAI8039743.1MEMBRANE COMPONENT OF ABC TRANSPORTER
CAI8039744.1TRANSPORT ATP-BINDING PROTEIN
CAI8039745.1ACETYLORNITHINE DEACETYLASE
CAI8039747.1MOLYBDENUM COFACTOR GUANYLYLTRANSFERASE
CAI8039746.1MOLYBDENUM COFACTOR GUANYLYLTRANSFERASE
CAI8039748.1SERINE PROTEASE FAMILY S1C HTRA-RELATED
CAI8039749.1REGULATOR OF RPOS
CAI8039750.1RIBONUCLEASE VAPC2
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